TSS: Rfhg 189392.1: Difference between revisions

Revision as of 16:01, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_189392.1
Species:	human
Chr:	chr17

Start:	7651573
End:	7651580
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2906143,EH38E1844573)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	ATP1B2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	650
Nearest PromoterID:	NM_001678
Entrez ID:	482
Nearest Unigene:	Hs.643540
Nearest Refseq:	NM_001678
Nearest Ensembl:	ENSG00000129244
Gene Name:	ATP1B2
Gene Alias:	AMOG
Gene Type:	protein-coding
CpG%:	0.142857
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=exon (NM_001678, exon 1 of 7)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001678
 |nearest_refseq=NM_001678
+|nearest_transcripts=
 |nearest_unigene=Hs.643540
 |peak_score=1