TSS: Rfhg 189624.1: Difference between revisions

Revision as of 16:04, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_189624.1
TSS ID(Version3):	hg_159443.1
Species:	human
Chr:	chr17

Start:	7905968
End:	7906071
Strand:	+

Source datasets

FANTOM5|DRA000914|ENCODE|RAMPAGE|PRJDB5282

Protocol

CAGE|RAMPAGE|C1CAGE

TSS cluster detected^*

5

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000517026.1:51
GeneID:	677763
HGNC/MGI_ID:	HGNC:32579
UniProt_ID:
Nearer transcript ids and distances:	NR_003000.1:52 DQ586430:223 view more...

Gene_name:	SCARNA21
Gene_symbol:	SCARNA21
Gene_synonyms:	ACA68 SCARNA21A
Gene_source:	HGNC:32579

TATA-Box annotation

Distance to TSS:	-104
Nearest PromoterID:	NR_003000
Entrez ID:	677763
Nearest Unigene:
Nearest Refseq:	NR_003000
Nearest Ensembl:	ENSG00000252835
Gene Name:	SCARNA21
Gene Alias:	ACA68\|SCARNA21A
Gene Type:	ncRNA
CpG%:	0.019417
GC%:	0.528846
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000517026.1:51 NR_003000.1:52 DQ586430:223
 |annotation=promoter-TSS (NR_003000)
 |ccre_category=N
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_003000
 |nearest_refseq=NR_003000
+|nearest_transcripts=NR_003000.1:52 DQ586430:223
 |nearest_unigene=
 |peak_score=1