TSS: Rfhg 190298.1: Difference between revisions

Revision as of 16:17, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_190298.1
Species:	human
Chr:	chr17

Start:	15467602
End:	15467626
Strand:	-

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000619038.5:0 NM_001204477.2:0 BC029542:0
GeneID:	284040
HGNC/MGI_ID:	HGNC:14383
UniProt_ID:	Q8N9R6
Nearer transcript ids and distances:	LF326226:-154 MA561803:-154 view more...

Gene_name:	CDRT4
Gene_symbol:	CDRT4
Gene_synonyms:	FLJ36674
Gene_source:	HGNC:14383

TATA-Box annotation

Distance to TSS:	7
Nearest PromoterID:	NM_001204477
Entrez ID:	284040
Nearest Unigene:	Hs.164595
Nearest Refseq:	NM_173622
Nearest Ensembl:	ENSG00000239704
Gene Name:	CDRT4
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.640000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000619038.5:0 NM_001204477.2:0 BC029542:0 LF326226:-154 MA561803:-154
 |annotation=promoter-TSS (NM_001204477)
 |ccre_category=N
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001204477
 |nearest_refseq=NM_173622
+|nearest_transcripts=LF326226:-154 MA561803:-154
 |nearest_unigene=Hs.164595
 |peak_score=1
@@ Line 33: / Line 35: @@
 |strand=-
 |tata_box=
-|transcript_name=ENST00000619038.5 BC029542
+|transcript_name=ENST00000619038.5 NM_001204477.2 BC029542
 |tss_cluster_detected=2
 |tss_id=rfhg_190298.1