TSS: Rfhg 191492.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=LQ072976:-453 MA646477:-453 MA734361:-453 MA803530:-453
|annotation=promoter-TSS (NM_020791)
|annotation=promoter-TSS (NM_020791)
|ccre_category=pELS
|ccre_category=pELS
Line 25: Line 26:
|nearest_promoter_id=NR_039749
|nearest_promoter_id=NR_039749
|nearest_refseq=NR_039749
|nearest_refseq=NR_039749
|nearest_transcripts=
|nearest_unigene=
|nearest_unigene=
|peak_score=1
|peak_score=1

Revision as of 16:40, 11 November 2024

Basic information about the TSS

TSS ID:rfhg_191492.1
Species:human
Chr:chr17
Start:29390216
End:29390235
Strand:-
Source datasetsPRJNA401781|PRJNA548673|PRJNA615891
ProtocolCAGE|RAMPAGE|oligo_capping|SLIC_CAGE
TSS cluster detected*5

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:pELS,CTCF-bound (EH38D2920704,EH38E1854818)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:LQ072976:-453
MA646477:-453
MA734361:-453
MA803530:-453
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:MIR4523
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation

    Distance to TSS:-437
    Nearest PromoterID:NR_039749
    Entrez ID:100616122
    Nearest Unigene:
    Nearest Refseq:NR_039749
    Nearest Ensembl:ENSG00000284162
    Gene Name:MIR4523
    Gene Alias:-
    Gene Type:ncRNA
    CpG%:0.105263
    GC%:0.700000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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