TSS: Rfhg 192267.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000617897.2:9 NM_032965.6:9 ENST00000610751.4:11 U58914:11 Z70292:15 Z70293:15 ENST00000616694.1:-44 BC140941:-44 AF031587:70 KJ897525:70 AB463484:70 NR_027921.3:-461 NR_027922.3:-461
|annotation=promoter-TSS (NM_032965)
|annotation=promoter-TSS (NM_032965)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_032965
|nearest_promoter_id=NM_032965
|nearest_refseq=NM_004167
|nearest_refseq=NM_004167
|nearest_transcripts=ENST00000610751.4:11 U58914:11 Z70292:15 Z70293:15 ENST00000616694.1:-44 BC140941:-44 AF031587:70 KJ897525:70 AB463484:70 NR_027921.3:-461 NR_027922.3:-461
|nearest_unigene=Hs.272493
|nearest_unigene=Hs.272493
|peak_score=1
|peak_score=1
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|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=ENST00000617897.2
|transcript_name=ENST00000617897.2 NM_032965.6
|tss_cluster_detected=1
|tss_cluster_detected=1
|tss_id=rfhg_192267.1
|tss_id=rfhg_192267.1

Revision as of 16:53, 11 November 2024

Basic information about the TSS

TSS ID:rfhg_192267.1
Species:human
Chr:chr17
Start:36001562
End:36001577
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2926438,EH38E1858749)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000617897.2:9
NM_032965.6:9
GeneID:6359
HGNC/MGI_ID:HGNC:10613
UniProt_ID:Q16663
Nearer transcript ids and distances:
  • ENST00000610751.4:11
  • U58914:11
  • Z70292:15
  • Z70293:15
  • ENST00000616694.1:-44
  • BC140941:-44
  • AF031587:70
  • KJ897525:70
  • AB463484:70
  • NR_027921.3:-461
  • NR_027922.3:-461
view more...
Gene_name:CCL15
Gene_symbol:CCL15
Gene_synonyms:HCC-2 HMRP-2B Lkn-1 MIP-1d MIP-5 NCC-3 SCYL3
Gene_source:HGNC:10613



TATA-Box annotation

Distance to TSS:-16
Nearest PromoterID:NM_032965
Entrez ID:6359
Nearest Unigene:Hs.272493
Nearest Refseq:NM_004167
Nearest Ensembl:ENSG00000275718
Gene Name:CCL15
Gene Alias:HCC-2|HMRP-2B|LKN-1|LKN1|MIP-1 delta|MIP-1D|MIP-5|MRP-2B|NCC-3|NCC3|SCYA15|SCYL3|SY15
Gene Type:protein-coding
CpG%:0.000000
GC%:0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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