TSS: Rfhg 192316.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000615863.2:0 ENST00000621626.1:0 NM_002984.4:0 AY766446:0 AY766448:0 J04130:0 M23502:0 BC107433:0 M25316:3 X53683:3 ENST00000613947.1:4 BC027961:4 AY312578:58 CR542119:69
|annotation=promoter-TSS (NM_001291470)
|annotation=promoter-TSS (NM_001291470)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_001291474
|nearest_promoter_id=NM_001291474
|nearest_refseq=NM_001001435
|nearest_refseq=NM_001001435
|nearest_transcripts=M25316:3 X53683:3 ENST00000613947.1:4 BC027961:4 AY312578:58 CR542119:69
|nearest_unigene=Hs.515183
|nearest_unigene=Hs.515183
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000615863.2 ENST00000621626.1 AY766446 AY766448 J04130 M23502 BC107433
|transcript_name=ENST00000615863.2 ENST00000621626.1 NM_002984.4 AY766446 AY766448 J04130 M23502 BC107433
|tss_cluster_detected=4
|tss_cluster_detected=4
|tss_id=rfhg_192316.1
|tss_id=rfhg_192316.1

Revision as of 16:54, 11 November 2024

Basic information about the TSS

TSS ID:rfhg_192316.1
Species:human
Chr:chr17
Start:36103820
End:36103837
Strand:+
Source datasetsFANTOM5|EPD|DRA000914|RAMPAGE
ProtocolCAGE|TSS_database|RAMPAGE
TSS cluster detected*4

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2926516,EH38E1858793)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000615863.2:0
ENST00000621626.1:0
NM_002984.4:0
AY766446:0
AY766448:0
J04130:0
M23502:0
BC107433:0
GeneID:6351
HGNC/MGI_ID:HGNC:10630
UniProt_ID:P13236 Q7M4M2
Nearer transcript ids and distances:
  • M25316:3
  • X53683:3
  • ENST00000613947.1:4
  • BC027961:4
  • AY312578:58
  • CR542119:69
view more...
Gene_name:CCL4L2
Gene_symbol:CCL4
Gene_synonyms:AT744.1 Act-2 MIP-1-beta
Gene_source:HGNC:10630



TATA-Box annotation

Distance to TSS:1
Nearest PromoterID:NM_001291474
Entrez ID:9560
Nearest Unigene:Hs.515183
Nearest Refseq:NM_001001435
Nearest Ensembl:ENSG00000276070
Gene Name:CCL4L2
Gene Alias:AT744.2|CCL4L|SCYA4L|SCYQ4L2
Gene Type:protein-coding
CpG%:0.000000
GC%:0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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