TSS: Hg 1070.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.035 |distance_to_tss=279 |entrez_id=644068 |gc_percent=0.452736 |gene_alias=RPS14_1_16 |gene_description=ribosomal protein S14 pseudogene 3 |gene_na...") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans=ENST00000457263.1:19 CU687246:19 HQ447545:19 KJ904328:19 NR_077246:-270 BC072682:-270 | |||
|chr=chr1 | |||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
|distance=19 | |||
|distance_to_tss=279 | |distance_to_tss=279 | ||
|end=19608095 | |||
|entrez_id=644068 | |entrez_id=644068 | ||
|gc_percent=0.452736 | |gc_percent=0.452736 | ||
|gene_alias=RPS14_1_16 | |gene_alias=RPS14_1_16 | ||
|gene_description=ribosomal protein S14 pseudogene 3 | |gene_description=ribosomal protein S14 pseudogene 3 | ||
|gene_name=RPS14P3 | |gene_id=644068 | ||
|gene_name=ribosomal protein S14 pseudogene 3 | |||
|gene_source=HGNC:35797 | |||
|gene_symbol=RPS14P3 | |||
|gene_synonyms= | |||
|gene_type=pseudo | |gene_type=pseudo | ||
|hgnc_mgi_id=HGNC:35797 | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_077246 | |nearest_promoter_id=NR_077246 | ||
|nearest_refseq=NR_077246 | |nearest_refseq=NR_077246 | ||
|nearest_unigene=Hs.660760 | |nearest_unigene=Hs.660760 | ||
|num_trans=6 | |||
|species=human | |||
|start=19608076 | |||
|strand=+ | |||
|tata_box="-88(CCATATAGAGAA,+,0.00),-65(TCGCTTAAAAGG,-,0.00),-63(GCTTAAAAGGGT,+,0.00),-18(ACCTATAAGAGC,-,0.00)" | |tata_box="-88(CCATATAGAGAA,+,0.00),-65(TCGCTTAAAAGG,-,0.00),-63(GCTTAAAAGGGT,+,0.00),-18(ACCTATAAGAGC,-,0.00)" | ||
|transcript_name=ENST00000457263.1 CU687246 HQ447545 KJ904328 | |||
|tss_classification=no | |||
|tss_id=hg_1070.1 | |tss_id=hg_1070.1 | ||
|tss_score=1 | |||
|uniprot_id= | |||
}} | }} | ||
Revision as of 22:42, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 279 |
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| Nearest PromoterID: | NR_077246 |
| Entrez ID: | 644068 |
| Nearest Unigene: | Hs.660760 |
| Nearest Refseq: | NR_077246 |
| Nearest Ensembl: | |
| Gene Name: | ribosomal protein S14 pseudogene 3 |
| Gene Alias: | RPS14_1_16 |
| Gene Description: | ribosomal protein S14 pseudogene 3 |
| Gene Type: | pseudo |
| CpG%: | 0.035 |
| GC%: | 0.452736 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-88(CCATATAGAGAA,+,0.00),-65(TCGCTTAAAAGG,-,0.00),-63(GCTTAAAAGGGT,+,0.00),-18(ACCTATAAGAGC,-,0.00)" |
TSS expression
Expression data not found.