TSS: Rfhg 193117.1: Difference between revisions

Revision as of 17:09, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_193117.1
Species:	human
Chr:	chr17

Start:	40456795
End:	40456821
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D2930460,EH38E1861819)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	IGFBP4
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	13358
Nearest PromoterID:	NM_001552
Entrez ID:	3487
Nearest Unigene:	Hs.462998
Nearest Refseq:	NM_001552
Nearest Ensembl:	ENSG00000141753
Gene Name:	IGFBP4
Gene Alias:	BP-4\|HT29-IGFBP\|IBP4\|IGFBP-4
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.481481
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=3' UTR (NM_001552, exon 4 of 4)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001552
 |nearest_refseq=NM_001552
+|nearest_transcripts=
 |nearest_unigene=Hs.462998
 |peak_score=1