TSS: Rfhg 194386.1: Difference between revisions

Revision as of 17:31, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_194386.1
Species:	human
Chr:	chr17

Start:	44315182
End:	44315192
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2934609,EH38E1865112)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF328072:-16 MA563649:-16
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	LF328073:54 MA563650:54 LF328071:-255 MA563648:-255 BC013240:324 LF328074:330 MA563651:330 ENST00000593079.1:-424 view more...

Gene_name:	RUNDC3A
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	6586
Nearest PromoterID:	NM_001144825
Entrez ID:	10900
Nearest Unigene:	Hs.500197
Nearest Refseq:	NM_006695
Nearest Ensembl:	ENSG00000108309
Gene Name:	RUNDC3A
Gene Alias:	RAP2IP\|RPIP-8\|RPIP8
Gene Type:	protein-coding
CpG%:	0.200000
GC%:	0.818182
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF328072:-16 MA563649:-16 LF328073:54 MA563650:54 LF328071:-255 MA563648:-255 BC013240:324 LF328074:330 MA563651:330 ENST00000593079.1:-424
 |annotation=exon (NM_001144826, exon 7 of 11)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001144825
 |nearest_refseq=NM_006695
+|nearest_transcripts=LF328073:54 MA563650:54 LF328071:-255 MA563648:-255 BC013240:324 LF328074:330 MA563651:330 ENST00000593079.1:-424
 |nearest_unigene=Hs.500197
 |peak_score=1