TSS: Rfhg 195320.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000357424.2:0 NM_004123.3:0 BC069100:0 M18185:0 MP574246:0 BC069663:0 BC069686:0 BC069746:0 BC096148:0 BC096149:0 BC096147:0 BC096146:0
|annotation=promoter-TSS (NM_004123)
|annotation=promoter-TSS (NM_004123)
|ccre_category=pELS
|ccre_category=pELS
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|nearest_promoter_id=NM_004123
|nearest_promoter_id=NM_004123
|nearest_refseq=NM_004123
|nearest_refseq=NM_004123
|nearest_transcripts=
|nearest_unigene=Hs.1454
|nearest_unigene=Hs.1454
|peak_score=1
|peak_score=1
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|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=ENST00000357424.2 BC069100 M18185 BC069663 BC069686 BC069746 BC096148 BC096149 BC096147 BC096146
|transcript_name=ENST00000357424.2 NM_004123.3 BC069100 M18185 MP574246 BC069663 BC069686 BC069746 BC096148 BC096149 BC096147 BC096146
|tss_cluster_detected=2
|tss_cluster_detected=2
|tss_id=rfhg_195320.1
|tss_id=rfhg_195320.1

Revision as of 17:51, 11 November 2024

Basic information about the TSS

TSS ID:rfhg_195320.1
Species:human
Chr:chr17
Start:48968588
End:48968602
Strand:-
Source datasetsFANTOM5|EPD
ProtocolCAGE|TSS_database
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:pELS (EH38D2939037,EH38E1868556)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000357424.2:0
NM_004123.3:0
BC069100:0
M18185:0
MP574246:0
BC069663:0
BC069686:0
BC069746:0
BC096148:0
BC096149:0
BC096147:0
BC096146:0
GeneID:2695
HGNC/MGI_ID:HGNC:4270
UniProt_ID:P09681
Nearer transcript ids and distances:
    Gene_name:GIP
    Gene_symbol:GIP
    Gene_synonyms:
    Gene_source:HGNC:4270



    TATA-Box annotation

    Distance to TSS:1
    Nearest PromoterID:NM_004123
    Entrez ID:2695
    Nearest Unigene:Hs.1454
    Nearest Refseq:NM_004123
    Nearest Ensembl:ENSG00000159224
    Gene Name:GIP
    Gene Alias:-
    Gene Type:protein-coding
    CpG%:0.000000
    GC%:0.533333
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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