TSS: Rfhg 195418.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=NR_106751.1:389 FR873489:397 FR863632:402
|annotation=promoter-TSS (NR_106751)
|annotation=promoter-TSS (NR_106751)
|ccre_category=pELS
|ccre_category=pELS
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|nearest_promoter_id=NR_106751
|nearest_promoter_id=NR_106751
|nearest_refseq=NR_106751
|nearest_refseq=NR_106751
|nearest_transcripts=FR873489:397 FR863632:402
|nearest_unigene=
|nearest_unigene=
|peak_score=1
|peak_score=1

Revision as of 17:53, 11 November 2024

Basic information about the TSS

TSS ID:rfhg_195418.1
Species:human
Chr:chr17
Start:49510418
End:49510428
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:pELS (EH38D2939616,EH38E1868992)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:NR_106751.1:389
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • FR873489:397
  • FR863632:402
view more...
Gene_name:MIR6165
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:-394
Nearest PromoterID:NR_106751
Entrez ID:102465141
Nearest Unigene:
Nearest Refseq:NR_106751
Nearest Ensembl:ENSG00000277478
Gene Name:MIR6165
Gene Alias:hsa-mir-6165
Gene Type:ncRNA
CpG%:0.100000
GC%:0.727273
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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