TSS: Rfhg 195908.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000393196.8:0 ENST00000487481.1:0 ENST00000336097.7:0 ENST00000480143.5:0 ENST00000512768.1:0 ENST00000511355.5:0 ENST00000393193.6:0 ENST00000475573.5:0 ENST00000376392.10:0 ENST00000555572.1:0 NM_198175.1:0 NM_000269.3:0 NM_001018136.3:0 NR_037149.2:0 AK291105:0 AL360191:0 D28367:0 AF487339:0 AK309160:0 AK313448:0 S68891:0 X73066:0 X17620:0 AL360166:0 BC000293:0 GQ900933:0 DQ109675:0 BC018994:0 BC133029:0 BC133031:0 BC107894:0 ENST00000013034.3:21 ENST00000456492.1:400
|annotation=promoter-TSS (NM_000269)
|annotation=promoter-TSS (NM_000269)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_000269
|nearest_promoter_id=NM_000269
|nearest_refseq=NM_000269
|nearest_refseq=NM_000269
|nearest_transcripts=ENST00000013034.3:21 ENST00000456492.1:400
|nearest_unigene=Hs.463456
|nearest_unigene=Hs.463456
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000393196.8 ENST00000487481.1 ENST00000336097.7 ENST00000480143.5 ENST00000512768.1 ENST00000511355.5 ENST00000393193.6 ENST00000475573.5 ENST00000376392.10 ENST00000555572.1 AK291105 AL360191 D28367 AF487339 AK309160 AK313448 S68891 X73066 X17620 AL360166 BC000293 GQ900933 DQ109675 BC018994 BC133029 BC133031 BC107894
|transcript_name=ENST00000393196.8 ENST00000487481.1 ENST00000336097.7 ENST00000480143.5 ENST00000512768.1 ENST00000511355.5 ENST00000393193.6 ENST00000475573.5 ENST00000376392.10 ENST00000555572.1 NM_198175.1 NM_000269.3 NM_001018136.3 NR_037149.2 AK291105 AL360191 D28367 AF487339 AK309160 AK313448 S68891 X73066 X17620 AL360166 BC000293 GQ900933 DQ109675 BC018994 BC133029 BC133031 BC107894
|tss_cluster_detected=11
|tss_cluster_detected=11
|tss_id=rfhg_195908.1
|tss_id=rfhg_195908.1

Revision as of 18:02, 11 November 2024

Basic information about the TSS

TSS ID:rfhg_195908.1
Species:human
Chr:chr17
Start:51153545
End:51153644
Strand:+
Source datasetsPRJNA401781|PRJNA4843412|DRA013844|PRJNA615891|PRJNA597322
|PRJDB5282|PRJNA548673
ProtocolCAGE|RAMPAGE|NETCAGE|oligo_capping|SLIC_CAGE|STRIPE-seq
|C1CAGE|TIF-seq2|ReCappable-seq
TSS cluster detected*11

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2941729,EH38E1870749)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000393196.8:0
ENST00000487481.1:0
ENST00000336097.7:0
ENST00000480143.5:0
ENST00000512768.1:0
ENST00000511355.5:0
ENST00000393193.6:0
ENST00000475573.5:0
ENST00000376392.10:0
ENST00000555572.1:0
NM_198175.1:0
NM_000269.3:0
NM_001018136.3:0
NR_037149.2:0
AK291105:0
AL360191:0
D28367:0
AF487339:0
AK309160:0
AK313448:0
S68891:0
X73066:0
X17620:0
AL360166:0
BC000293:0
GQ900933:0
DQ109675:0
BC018994:0
BC133029:0
BC133031:0
BC107894:0
GeneID:4830 654364
HGNC/MGI_ID:HGNC:33531 HGNC:7849
UniProt_ID:A0A384MTW7 E5RHP0 E7ERL0 J3KPD9 P15531 Q32Q12
Nearer transcript ids and distances:
  • ENST00000013034.3:21
  • ENST00000456492.1:400
view more...
Gene_name:NME1
Gene_symbol:NME1 NME1-NME2
Gene_synonyms:NDPKA NM23 NM23-H1 NM23-LV NMELV
Gene_source:HGNC:33531 HGNC:7849



TATA-Box annotation

Distance to TSS:35
Nearest PromoterID:NM_000269
Entrez ID:4830
Nearest Unigene:Hs.463456
Nearest Refseq:NM_000269
Nearest Ensembl:ENSG00000239672
Gene Name:NME1
Gene Alias:AWD|GAAD|NB|NBS|NDKA|NDPK-A|NDPKA|NM23|NM23-H1
Gene Type:protein-coding
CpG%:0.131313
GC%:0.680000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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