TSS: Rfhg 19649.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000261455.9:0 ENST00000535273.2:0 ENST00000471937.1:0 NM_001198862.2:0 NM_018252.3:0 NM_001377480.1:0 NM_001377478.1:0 NM_001377479.1:0 NR_165303.1:0 AK001736:0 BC006320:0 AK024066:0 AK297200:0 CU675347:58 HQ448200:59 KJ894167:59 CR457268:59 AK295224:84
|annotation=promoter-TSS (NM_018252)
|annotation=promoter-TSS (NM_018252)
|ccre_category=PLS
|ccre_category=PLS
Line 25: Line 26:
|nearest_promoter_id=NM_018252
|nearest_promoter_id=NM_018252
|nearest_refseq=NM_018252
|nearest_refseq=NM_018252
|nearest_transcripts=CU675347:58 HQ448200:59 KJ894167:59 CR457268:59 AK295224:84
|nearest_unigene=Hs.445386
|nearest_unigene=Hs.445386
|peak_score=1
|peak_score=1
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|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=ENST00000261455.9 ENST00000535273.2 ENST00000471937.1 AK001736 BC006320 AK024066 AK297200
|transcript_name=ENST00000261455.9 ENST00000535273.2 ENST00000471937.1 NM_001198862.2 NM_018252.3 NM_001377480.1 NM_001377478.1 NM_001377479.1 NR_165303.1 AK001736 BC006320 AK024066 AK297200
|tss_cluster_detected=6
|tss_cluster_detected=6
|tss_id=rfhg_19649.1
|tss_id=rfhg_19649.1

Revision as of 18:13, 11 November 2024

Basic information about the TSS

TSS ID:rfhg_19649.1
Species:human
Chr:chr1
Start:212414816
End:212414923
Strand:-
Source datasetsPRJDB5282|PRJNA4843412|DRA013844|PRJNA615891|PRJNA401781
|PRJNA548673
ProtocolC1CAGE|NETCAGE|CAGE|SLIC_CAGE|ReCappable-seq
TSS cluster detected*6

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2273154,EH38E1420197)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000261455.9:0
ENST00000535273.2:0
ENST00000471937.1:0
NM_001198862.2:0
NM_018252.3:0
NM_001377480.1:0
NM_001377478.1:0
NM_001377479.1:0
NR_165303.1:0
AK001736:0
BC006320:0
AK024066:0
AK297200:0
GeneID:55248
HGNC/MGI_ID:HGNC:25593
UniProt_ID:Q9H813
Nearer transcript ids and distances:
  • CU675347:58
  • HQ448200:59
  • KJ894167:59
  • CR457268:59
  • AK295224:84
view more...
Gene_name:PACC1
Gene_symbol:PACC1
Gene_synonyms:ASOR FLJ10874 PAC PAORAC
Gene_source:HGNC:25593



TATA-Box annotation

Distance to TSS:17
Nearest PromoterID:NM_018252
Entrez ID:55248
Nearest Unigene:Hs.445386
Nearest Refseq:NM_018252
Nearest Ensembl:ENSG00000065600
Gene Name:PACC1
Gene Alias:C1orf75|PAC|TMEM206
Gene Type:protein-coding
CpG%:0.140187
GC%:0.731481
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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