TSS: Rfhg 196560.1: Difference between revisions

Revision as of 18:14, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_196560.1
Species:	human
Chr:	chr17

Start:	58692011
End:	58692020
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D2947366,EH38E1874332)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000583666.2:0 BC040526:0 AK308299:0
GeneID:	56155
HGNC/MGI_ID:	HGNC:11737 HGNC:43611
UniProt_ID:	A0A1W2PR95
Nearer transcript ids and distances:	ENST00000240361.12:-3 ENST00000349033.10:-25 ENST00000582740.1:-25 NM_001201457.2:-25 NM_198393.4:-25 NM_031272.5:-25 NM_001395966.1:-25 BC045647:-25 AK125896:-25 ENST00000389934.7:-35 LF384792:-35 LP896078:-35 MA620369:-35 AL834143:-35 view more...

Gene_name:	TEX14
Gene_symbol:	IGBP1C TEX14
Gene_synonyms:	CT113
Gene_source:	HGNC:11737 HGNC:43611

TATA-Box annotation

Distance to TSS:	40
Nearest PromoterID:	NM_031272
Entrez ID:	56155
Nearest Unigene:	Hs.390221
Nearest Refseq:	NM_031272
Nearest Ensembl:	ENSG00000121101
Gene Name:	TEX14
Gene Alias:	CT113\|SPGF23
Gene Type:	protein-coding
CpG%:	0.222222
GC%:	0.800000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000583666.2:0 BC040526:0 AK308299:0 ENST00000240361.12:-3 ENST00000349033.10:-25 ENST00000582740.1:-25 NM_001201457.2:-25 NM_198393.4:-25 NM_031272.5:-25 NM_001395966.1:-25 BC045647:-25 AK125896:-25 ENST00000389934.7:-35 LF384792:-35 LP896078:-35 MA620369:-35 AL834143:-35
 |annotation=promoter-TSS (NR_103872)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_031272
 |nearest_refseq=NM_031272
+|nearest_transcripts=ENST00000240361.12:-3 ENST00000349033.10:-25 ENST00000582740.1:-25 NM_001201457.2:-25 NM_198393.4:-25 NM_031272.5:-25 NM_001395966.1:-25 BC045647:-25 AK125896:-25 ENST00000389934.7:-35 LF384792:-35 LP896078:-35 MA620369:-35 AL834143:-35
 |nearest_unigene=Hs.390221
 |peak_score=1