TSS: Rfhg 196813.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000461535.1:-64
|annotation=promoter-TSS (NM_032582)
|annotation=promoter-TSS (NM_032582)
|ccre_category=N
|ccre_category=N
Line 25: Line 26:
|nearest_promoter_id=NM_032582
|nearest_promoter_id=NM_032582
|nearest_refseq=NM_032582
|nearest_refseq=NM_032582
|nearest_transcripts=
|nearest_unigene=Hs.132868
|nearest_unigene=Hs.132868
|peak_score=1
|peak_score=1

Revision as of 18:18, 11 November 2024

Basic information about the TSS

TSS ID:rfhg_196813.1
Species:human
Chr:chr17
Start:60392493
End:60392514
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000461535.1:-64
GeneID:124773
HGNC/MGI_ID:HGNC:26990
UniProt_ID:A0A0G2JLI9
Nearer transcript ids and distances:
    Gene_name:USP32
    Gene_symbol:CHCT1
    Gene_synonyms:
    Gene_source:HGNC:26990



    TATA-Box annotation

    Distance to TSS:-370
    Nearest PromoterID:NM_032582
    Entrez ID:84669
    Nearest Unigene:Hs.132868
    Nearest Refseq:NM_032582
    Nearest Ensembl:ENSG00000170832
    Gene Name:USP32
    Gene Alias:NY-REN-60|USP10
    Gene Type:protein-coding
    CpG%:0.142857
    GC%:0.681818
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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