TSS: Rfhg 196816.1: Difference between revisions

Revision as of 18:19, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_196816.1
Species:	human
Chr:	chr17

Start:	60421706
End:	60421728
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2948773,EH38E1875454)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000474834.5:14
GeneID:	124773
HGNC/MGI_ID:	HGNC:26990
UniProt_ID:	K7EQ24
Nearer transcript ids and distances:

Gene_name:	C17orf64
Gene_symbol:	CHCT1
Gene_synonyms:
Gene_source:	HGNC:26990

TATA-Box annotation

Distance to TSS:	-772
Nearest PromoterID:	NM_181707
Entrez ID:	124773
Nearest Unigene:	Hs.129312
Nearest Refseq:	NM_181707
Nearest Ensembl:	ENSG00000141371
Gene Name:	C17orf64
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.045455
GC%:	0.695652
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000474834.5:14
 |annotation=promoter-TSS (NM_181707)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_181707
 |nearest_refseq=NM_181707
+|nearest_transcripts=
 |nearest_unigene=Hs.129312
 |peak_score=1