TSS: Rfhg 19957.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000366932.4:0 ENST00000491428.1:0 NM_016052.4:0 AK290066:0 BC003668:0 BC020641:0 AF151873:10
|annotation=promoter-TSS (NM_016052)
|annotation=promoter-TSS (NM_016052)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_016052
|nearest_promoter_id=NM_016052
|nearest_refseq=NM_016052
|nearest_refseq=NM_016052
|nearest_transcripts=AF151873:10
|nearest_unigene=Hs.660109
|nearest_unigene=Hs.660109
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000366932.4 ENST00000491428.1 AK290066 BC003668 BC020641
|transcript_name=ENST00000366932.4 ENST00000491428.1 NM_016052.4 AK290066 BC003668 BC020641
|tss_cluster_detected=15
|tss_cluster_detected=15
|tss_id=rfhg_19957.1
|tss_id=rfhg_19957.1

Revision as of 19:09, 11 November 2024

Basic information about the TSS

TSS ID:rfhg_19957.1
TSS ID(Version3):hg_8595.1
Species:human
Chr:chr1
Start:218285284
End:218285342
Strand:+
Source datasetsFANTOM5|EPD|DRA000914|ENCODE|PRJNA615891|PRJNA597322
|PRJNA4843412|DRA013844|PRJDB5282|PRJNA401781|PRJNA548673
ProtocolCAGE|TSS_database|TIF-seq2|STRIPE-seq|NETCAGE|C1CAGE
|RAMPAGE|oligo_capping|ReCappable-seq|SLIC_CAGE
TSS cluster detected*15

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2277723,EH38E1422938)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000366932.4:0
ENST00000491428.1:0
NM_016052.4:0
AK290066:0
BC003668:0
BC020641:0
GeneID:51018
HGNC/MGI_ID:HGNC:24255
UniProt_ID:A0JLN3 A8K201 Q9Y3B9
Nearer transcript ids and distances:
  • AF151873:10
Gene_name:RRP15
Gene_symbol:RRP15
Gene_synonyms:CGI-115
Gene_source:HGNC:24255



TATA-Box annotation

Distance to TSS:20
Nearest PromoterID:NM_016052
Entrez ID:51018
Nearest Unigene:Hs.660109
Nearest Refseq:NM_016052
Nearest Ensembl:ENSG00000067533
Gene Name:RRP15
Gene Alias:CGI-115|KIAA0507
Gene Type:protein-coding
CpG%:0.120690
GC%:0.644068
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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