TSS: Rfhg 207016.1: Difference between revisions

Revision as of 21:30, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_207016.1
Species:	human
Chr:	chr19

Start:	7874711
End:	7874726
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D3038884,EH38E1936840)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF208016:71 MA443593:71
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	LF212179:-135 MA447756:-135 ENST00000618550.5:321 NM_001190467.2:321 NR_104345.2:321 view more...

Gene_name:	PRR36
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-277
Nearest PromoterID:	NR_104345
Entrez ID:	80164
Nearest Unigene:	Hs.288540
Nearest Refseq:	NM_001080403
Nearest Ensembl:	ENSG00000183248
Gene Name:	PRR36
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.133333
GC%:	0.687500
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF208016:71 MA443593:71 LF212179:-135 MA447756:-135 ENST00000618550.5:321 NM_001190467.2:321 NR_104345.2:321
 |annotation=promoter-TSS (NM_001190467)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_104345
 |nearest_refseq=NM_001080403
+|nearest_transcripts=LF212179:-135 MA447756:-135 ENST00000618550.5:321 NM_001190467.2:321 NR_104345.2:321
 |nearest_unigene=Hs.288540
 |peak_score=1