TSS: Rfhg 207233.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000683217.1:0 ENST00000343499.8:0 ENST00000592912.5:0 NM_001384658.1:0 NM_001172651.2:0 NM_003451.3:0 U37263:0
|annotation=promoter-TSS (NM_003451)
|annotation=promoter-TSS (NM_003451)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_003451
|nearest_promoter_id=NM_003451
|nearest_refseq=NM_003451
|nearest_refseq=NM_003451
|nearest_transcripts=
|nearest_unigene=Hs.728944
|nearest_unigene=Hs.728944
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000683217.1 ENST00000343499.8 ENST00000592912.5 U37263
|transcript_name=ENST00000683217.1 ENST00000343499.8 ENST00000592912.5 NM_001384658.1 NM_001172651.2 NM_003451.3 U37263
|tss_cluster_detected=1
|tss_cluster_detected=1
|tss_id=rfhg_207233.1
|tss_id=rfhg_207233.1

Revision as of 21:33, 11 November 2024

Basic information about the TSS


TSS ID:rfhg_207233.1
Species:human
Chr:chr19
Start:9363001
End:9363036
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:PLS (EH38D3039917,EH38E1937639)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENST00000683217.1:0
ENST00000343499.8:0
ENST00000592912.5:0
NM_001384658.1:0
NM_001172651.2:0
NM_003451.3:0
U37263:0
GeneID:100529215 7730
HGNC/MGI_ID:HGNC:12966 HGNC:42964
UniProt_ID:K7EQU1 Q13360
Nearer transcript ids and distances:
    Gene_name:ZNF177
    Gene_symbol:ZNF177 ZNF559-ZNF177
    Gene_synonyms:
    Gene_source:HGNC:12966 HGNC:42964



    TATA-Box annotation


    Distance to TSS:5
    Nearest PromoterID:NM_003451
    Entrez ID:7730
    Nearest Unigene:Hs.728944
    Nearest Refseq:NM_003451
    Nearest Ensembl:ENSG00000188629
    Gene Name:ZNF177
    Gene Alias:PIGX
    Gene Type:protein-coding
    CpG%:0.114286
    GC%:0.638889
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.