TSS: Rfhg 207233.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000683217.1:0 ENST00000343499.8:0 ENST00000592912.5:0 NM_001384658.1:0 NM_001172651.2:0 NM_003451.3:0 U37263:0 | |||
|annotation=promoter-TSS (NM_003451) | |annotation=promoter-TSS (NM_003451) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_003451 | |nearest_promoter_id=NM_003451 | ||
|nearest_refseq=NM_003451 | |nearest_refseq=NM_003451 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.728944 | |nearest_unigene=Hs.728944 | ||
|peak_score=1 | |peak_score=1 | ||
| Line 33: | Line 35: | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000683217.1 ENST00000343499.8 ENST00000592912.5 U37263 | |transcript_name=ENST00000683217.1 ENST00000343499.8 ENST00000592912.5 NM_001384658.1 NM_001172651.2 NM_003451.3 U37263 | ||
|tss_cluster_detected=1 | |tss_cluster_detected=1 | ||
|tss_id=rfhg_207233.1 | |tss_id=rfhg_207233.1 | ||
Revision as of 21:33, 11 November 2024
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS (EH38D3039917,EH38E1937639) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 5 |
|---|---|
| Nearest PromoterID: | NM_003451 |
| Entrez ID: | 7730 |
| Nearest Unigene: | Hs.728944 |
| Nearest Refseq: | NM_003451 |
| Nearest Ensembl: | ENSG00000188629 |
| Gene Name: | ZNF177 |
| Gene Alias: | PIGX |
| Gene Type: | protein-coding |
| CpG%: | 0.114286 |
| GC%: | 0.638889 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.