TSS: Rfhg 207421.1: Difference between revisions

Revision as of 21:37, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_207421.1
Species:	human
Chr:	chr19

Start:	10286474
End:	10286507
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D3040552,EH38E1938146)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF375768:-436 MA611345:-436
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000380770.5:448 NM_001039132.3:448 NM_001544.5:448 BC029364:460 ENST00000340992.4:467 BC000046:467 ENST00000393717.2:497 AH004780:497 L27670:497 L27671:497 view more...

Gene_name:	ICAM4
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-465
Nearest PromoterID:	NM_001544
Entrez ID:	3386
Nearest Unigene:	Hs.706750
Nearest Refseq:	NM_001544
Nearest Ensembl:	ENSG00000105371
Gene Name:	ICAM4
Gene Alias:	CD242\|LW
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.617647
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF375768:-436 MA611345:-436 ENST00000380770.5:448 NM_001039132.3:448 NM_001544.5:448 BC029364:460 ENST00000340992.4:467 BC000046:467 ENST00000393717.2:497 AH004780:497 L27670:497 L27671:497
 |annotation=promoter-TSS (NM_001544)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001544
 |nearest_refseq=NM_001544
+|nearest_transcripts=ENST00000380770.5:448 NM_001039132.3:448 NM_001544.5:448 BC029364:460 ENST00000340992.4:467 BC000046:467 ENST00000393717.2:497 AH004780:497 L27670:497 L27671:497
 |nearest_unigene=Hs.706750
 |peak_score=1