TSS: Rfhg 208632.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=NM_001300914.2:0 ENST00000598235.2:41 ENST00000677204.1:176 ENST00000676577.1:307 MP015449:-343 CR536485:-380 CR541677:-380 AB463573:-381 CU676466:-381 KJ891407:-386 BC019827:-404 BC002352:-414 BC013157:-416 D49547:-420 X62421:-425 ENST00000254322.3:-428 NM_006145.3:-428 ENST00000595139.2:-438 AK312624:-451 AK296609:-455 | |||
|annotation=promoter-TSS (NM_001300914) | |annotation=promoter-TSS (NM_001300914) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
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|nearest_promoter_id=NM_001300914 | |nearest_promoter_id=NM_001300914 | ||
|nearest_refseq=NM_006145 | |nearest_refseq=NM_006145 | ||
|nearest_transcripts=ENST00000598235.2:41 ENST00000677204.1:176 ENST00000676577.1:307 MP015449:-343 CR536485:-380 CR541677:-380 AB463573:-381 CU676466:-381 KJ891407:-386 BC019827:-404 BC002352:-414 BC013157:-416 D49547:-420 X62421:-425 ENST00000254322.3:-428 NM_006145.3:-428 ENST00000595139.2:-438 AK312624:-451 AK296609:-455 | |||
|nearest_unigene=Hs.515210 | |nearest_unigene=Hs.515210 | ||
|peak_score=1 | |peak_score=1 | ||
Revision as of 21:59, 11 November 2024
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D3044537,EH38E1941415) |
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| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -60 |
|---|---|
| Nearest PromoterID: | NM_001300914 |
| Entrez ID: | 3337 |
| Nearest Unigene: | Hs.515210 |
| Nearest Refseq: | NM_006145 |
| Nearest Ensembl: | ENSG00000132002 |
| Gene Name: | DNAJB1 |
| Gene Alias: | HSPF1|Hdj1|Hsp40|RSPH16B|Sis1 |
| Gene Type: | protein-coding |
| CpG%: | 0.075269 |
| GC%: | 0.744681 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
Property "Nearest transcripts" (as page type) with input value "ENST00000598235.2:41 ENST00000677204.1:176 ENST00000676577.1:307 MP015449:-343 CR536485:-380 CR541677:-380 AB463573:-381 CU676466:-381 KJ891407:-386 BC019827:-404 BC002352:-414 BC013157:-416 D49547:-420 X62421:-425 ENST00000254322.3:-428 NM_006145.3:-428 ENST00000595139.2:-438 AK312624:-451 AK296609:-455" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.