TSS: Rfhg 210301.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000653426.1:0 ENST00000667196.1:0 ENST00000655543.1:0 ENST00000670399.1:0 ENST00000592404.6:0 ENST00000668414.1:0 ENST00000659857.1:0 ENST00000667566.1:0 ENST00000588122.5:0 ENST00000656827.1:0 ENST00000586784.1:0 ENST00000592806.1:0 ENST00000590628.1:0 ENST00000588318.1:0 BC024732:0 ENST00000585917.6:-12 ENST00000666789.1:-12 NR_110689.2:-12 NR_110691.2:-12 NR_110688.2:-12 NR_146735.1:-12 NR_146734.1:-12 NR_146733.1:-12 ENST00000669503.1:392 NR_110690.1:392 NR_110687.1:392 NR_146736.1:392 ENST00000668186.1:465 ENST00000669909.1:498
|annotation=promoter-TSS (NR_110688)
|annotation=promoter-TSS (NR_110688)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NR_110691
|nearest_promoter_id=NR_110691
|nearest_refseq=NR_110687
|nearest_refseq=NR_110687
|nearest_transcripts=ENST00000585917.6:-12 ENST00000666789.1:-12 NR_110689.2:-12 NR_110691.2:-12 NR_110688.2:-12 NR_146735.1:-12 NR_146734.1:-12 NR_146733.1:-12 ENST00000669503.1:392 NR_110690.1:392 NR_110687.1:392 NR_146736.1:392 ENST00000668186.1:465 ENST00000669909.1:498
|nearest_unigene=Hs.567934
|nearest_unigene=Hs.567934
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=BC024732
|transcript_name=ENST00000653426.1 ENST00000667196.1 ENST00000655543.1 ENST00000670399.1 ENST00000592404.6 ENST00000668414.1 ENST00000659857.1 ENST00000667566.1 ENST00000588122.5 ENST00000656827.1 ENST00000586784.1 ENST00000592806.1 ENST00000590628.1 ENST00000588318.1 BC024732
|tss_cluster_detected=11
|tss_cluster_detected=11
|tss_id=rfhg_210301.1
|tss_id=rfhg_210301.1

Revision as of 22:28, 11 November 2024

Basic information about the TSS

TSS ID:rfhg_210301.1
TSS ID(Version3):hg_174970.1
Species:human
Chr:chr19
Start:27793443
End:27793503
Strand:+
Source datasetsFANTOM5|PRJNA4843412|DRA013844|PRJDB5282|PRJNA401781
|PRJNA548673|PRJNA615891
ProtocolCAGE|NETCAGE|C1CAGE|oligo_capping|RAMPAGE|ReCappable-seq
|SLIC_CAGE|TIF-seq2
TSS cluster detected*11

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D3051855,EH38E1946954)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000653426.1:0
ENST00000667196.1:0
ENST00000655543.1:0
ENST00000670399.1:0
ENST00000592404.6:0
ENST00000668414.1:0
ENST00000659857.1:0
ENST00000667566.1:0
ENST00000588122.5:0
ENST00000656827.1:0
ENST00000586784.1:0
ENST00000592806.1:0
ENST00000590628.1:0
ENST00000588318.1:0
BC024732:0
GeneID:101927151
HGNC/MGI_ID:HGNC:56093
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000585917.6:-12
  • ENST00000666789.1:-12
  • NR_110689.2:-12
  • NR_110691.2:-12
  • NR_110688.2:-12
  • NR_146735.1:-12
  • NR_146734.1:-12
  • NR_146733.1:-12
  • ENST00000669503.1:392
  • NR_110690.1:392
  • NR_110687.1:392
  • NR_146736.1:392
  • ENST00000668186.1:465
  • ENST00000669909.1:498
view more...
Gene_name:LOC101927151
Gene_symbol:LINC02987
Gene_synonyms:
Gene_source:HGNC:56093



TATA-Box annotation

Distance to TSS:42
Nearest PromoterID:NR_110691
Entrez ID:101927151
Nearest Unigene:Hs.567934
Nearest Refseq:NR_110687
Nearest Ensembl:ENSG00000267575
Gene Name:LOC101927151
Gene Alias:-
Gene Type:ncRNA
CpG%:0.050000
GC%:0.622951
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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