TSS: Rfhg 210302.1: Difference between revisions

Revision as of 22:28, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_210302.1
Species:	human
Chr:	chr19

Start:	27793514
End:	27793522
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3051855,EH38E1946954)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000588318.1:-11
GeneID:	101927151
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000590628.1:-20 BC024732:-20 ENST00000592806.1:-26 ENST00000586784.1:-31 ENST00000656827.1:-43 ENST00000588122.5:-51 ENST00000667566.1:-53 ENST00000592404.6:-62 ENST00000668414.1:-62 ENST00000659857.1:-62 ENST00000670399.1:-65 ENST00000655543.1:-66 ENST00000667196.1:-67 ENST00000653426.1:-71 ENST00000585917.6:-83 ENST00000666789.1:-83 NR_110689.2:-83 NR_110691.2:-83 NR_110688.2:-83 NR_146735.1:-83 NR_146734.1:-83 NR_146733.1:-83 ENST00000669503.1:373 NR_110690.1:373 NR_110687.1:373 NR_146736.1:373 ENST00000668186.1:446 ENST00000669909.1:479 ENST00000586220.2:486 ENST00000664065.1:486 ENST00000661017.1:496 ENST00000668903.1:496 view more...

Gene_name:	LOC101927151
Gene_symbol:	LINC02987
Gene_synonyms:
Gene_source:	EntrezGene:101927151

TATA-Box annotation

Distance to TSS:	87
Nearest PromoterID:	NR_110691
Entrez ID:	101927151
Nearest Unigene:	Hs.567934
Nearest Refseq:	NR_110687
Nearest Ensembl:	ENSG00000267575
Gene Name:	LOC101927151
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.555556
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

Property "Nearest transcripts" (as page type) with input value "ENST00000590628.1:-20 BC024732:-20 ENST00000592806.1:-26 ENST00000586784.1:-31 ENST00000656827.1:-43 ENST00000588122.5:-51 ENST00000667566.1:-53 ENST00000592404.6:-62 ENST00000668414.1:-62 ENST00000659857.1:-62 ENST00000670399.1:-65 ENST00000655543.1:-66 ENST00000667196.1:-67 ENST00000653426.1:-71 ENST00000585917.6:-83 ENST00000666789.1:-83 NR_110689.2:-83 NR_110691.2:-83 NR_110688.2:-83 NR_146735.1:-83 NR_146734.1:-83 NR_146733.1:-83 ENST00000669503.1:373 NR_110690.1:373 NR_110687.1:373 NR_146736.1:373 ENST00000668186.1:446 ENST00000669909.1:479 ENST00000586220.2:486 ENST00000664065.1:486 ENST00000661017.1:496 ENST00000668903.1:496" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000588318.1:-11 ENST00000590628.1:-20 BC024732:-20 ENST00000592806.1:-26 ENST00000586784.1:-31 ENST00000656827.1:-43 ENST00000588122.5:-51 ENST00000667566.1:-53 ENST00000592404.6:-62 ENST00000668414.1:-62 ENST00000659857.1:-62 ENST00000670399.1:-65 ENST00000655543.1:-66 ENST00000667196.1:-67 ENST00000653426.1:-71 ENST00000585917.6:-83 ENST00000666789.1:-83 NR_110689.2:-83 NR_110691.2:-83 NR_110688.2:-83 NR_146735.1:-83 NR_146734.1:-83 NR_146733.1:-83 ENST00000669503.1:373 NR_110690.1:373 NR_110687.1:373 NR_146736.1:373 ENST00000668186.1:446 ENST00000669909.1:479 ENST00000586220.2:486 ENST00000664065.1:486 ENST00000661017.1:496 ENST00000668903.1:496
 |annotation=promoter-TSS (NR_110688)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_110691
 |nearest_refseq=NR_110687
+|nearest_transcripts=ENST00000590628.1:-20 BC024732:-20 ENST00000592806.1:-26 ENST00000586784.1:-31 ENST00000656827.1:-43 ENST00000588122.5:-51 ENST00000667566.1:-53 ENST00000592404.6:-62 ENST00000668414.1:-62 ENST00000659857.1:-62 ENST00000670399.1:-65 ENST00000655543.1:-66 ENST00000667196.1:-67 ENST00000653426.1:-71 ENST00000585917.6:-83 ENST00000666789.1:-83 NR_110689.2:-83 NR_110691.2:-83 NR_110688.2:-83 NR_146735.1:-83 NR_146734.1:-83 NR_146733.1:-83 ENST00000669503.1:373 NR_110690.1:373 NR_110687.1:373 NR_146736.1:373 ENST00000668186.1:446 ENST00000669909.1:479 ENST00000586220.2:486 ENST00000664065.1:486 ENST00000661017.1:496 ENST00000668903.1:496
 |nearest_unigene=Hs.567934
 |peak_score=1