TSS: Rfhg 210306.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000661017.1:0 ENST00000668903.1:0 ENST00000588784.1:0 ENST00000669826.1:0 ENST00000587188.2:0 ENST00000591549.1:0 ENST00000660309.1:0 ENST00000585827.1:0 ENST00000588636.1:0 ENST00000663452.1:0 AK095009:0 ENST00000586220.2:-2 ENST00000664065.1:-2 ENST00000669909.1:-9 ENST00000668186.1:-42 ENST00000669503.1:-115 NR_110690.1:-115 NR_110687.1:-115 NR_146736.1:-115
|annotation=promoter-TSS (NR_027301)
|annotation=promoter-TSS (NR_027301)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NR_027301
|nearest_promoter_id=NR_027301
|nearest_refseq=NR_027301
|nearest_refseq=NR_027301
|nearest_transcripts=ENST00000586220.2:-2 ENST00000664065.1:-2 ENST00000669909.1:-9 ENST00000668186.1:-42 ENST00000669503.1:-115 NR_110690.1:-115 NR_110687.1:-115 NR_146736.1:-115
|nearest_unigene=Hs.706547
|nearest_unigene=Hs.706547
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000661017.1 ENST00000668903.1 ENST00000588784.1 ENST00000669826.1 ENST00000587188.2 ENST00000591549.1 ENST00000660309.1 ENST00000585827.1 ENST00000588636.1 ENST00000663452.1
|transcript_name=ENST00000661017.1 ENST00000668903.1 ENST00000588784.1 ENST00000669826.1 ENST00000587188.2 ENST00000591549.1 ENST00000660309.1 ENST00000585827.1 ENST00000588636.1 ENST00000663452.1 AK095009
|tss_cluster_detected=9
|tss_cluster_detected=9
|tss_id=rfhg_210306.1
|tss_id=rfhg_210306.1

Revision as of 22:28, 11 November 2024

Basic information about the TSS

TSS ID:rfhg_210306.1
TSS ID(Version3):hg_174972.1
Species:human
Chr:chr19
Start:27794010
End:27794066
Strand:+
Source datasetsFANTOM5|PRJNA4843412|DRA013844|PRJNA401781|PRJNA548673
|PRJDB5282
ProtocolCAGE|NETCAGE|RAMPAGE|oligo_capping|ReCappable-seq|C1CAGE
TSS cluster detected*9

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D3051857,EH38E1946956)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000661017.1:0
ENST00000668903.1:0
ENST00000588784.1:0
ENST00000669826.1:0
ENST00000587188.2:0
ENST00000591549.1:0
ENST00000660309.1:0
ENST00000585827.1:0
ENST00000588636.1:0
ENST00000663452.1:0
AK095009:0
GeneID:101927151
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000586220.2:-2
  • ENST00000664065.1:-2
  • ENST00000669909.1:-9
  • ENST00000668186.1:-42
  • ENST00000669503.1:-115
  • NR_110690.1:-115
  • NR_110687.1:-115
  • NR_146736.1:-115
view more...
Gene_name:LINC00662
Gene_symbol:LINC02987
Gene_synonyms:
Gene_source:EntrezGene:101927151



TATA-Box annotation

Distance to TSS:-98
Nearest PromoterID:NR_027301
Entrez ID:148189
Nearest Unigene:Hs.706547
Nearest Refseq:NR_027301
Nearest Ensembl:ENSG00000261824
Gene Name:LINC00662
Gene Alias:-
Gene Type:ncRNA
CpG%:0.071429
GC%:0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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