TSS: Rfhg 210562.1: Difference between revisions

Revision as of 22:33, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_210562.1
Species:	human
Chr:	chr19

Start:	33301377
End:	33301395
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D3056244,EH38E1949610)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF213080:-244 MA448657:-244
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	LF367535:259 MA603112:259 view more...

Gene_name:	CEBPA
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	1148
Nearest PromoterID:	NM_001287424
Entrez ID:	1050
Nearest Unigene:	Hs.76171
Nearest Refseq:	NM_004364
Nearest Ensembl:	ENSG00000245848
Gene Name:	CEBPA
Gene Alias:	C/EBP-alpha\|CEBP
Gene Type:	protein-coding
CpG%:	0.055556
GC%:	0.631579
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF213080:-244 MA448657:-244 LF367535:259 MA603112:259
 |annotation=exon (NM_001287424, exon 1 of 1)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001287424
 |nearest_refseq=NM_004364
+|nearest_transcripts=LF367535:259 MA603112:259
 |nearest_unigene=Hs.76171
 |peak_score=1