TSS: Rfhg 211041.1: Difference between revisions

Revision as of 22:41, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_211041.1
Species:	human
Chr:	chr19

Start:	35673219
End:	35673235
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3058361,EH38E1951145)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	UPK1A-AS1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	64
Nearest PromoterID:	NR_046420
Entrez ID:	100862728
Nearest Unigene:	Hs.569952
Nearest Refseq:	NR_046420
Nearest Ensembl:	ENSG00000226510
Gene Name:	UPK1A-AS1
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.588235
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=promoter-TSS (NR_046420)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_046420
 |nearest_refseq=NR_046420
+|nearest_transcripts=
 |nearest_unigene=Hs.569952
 |peak_score=1