TSS: Rfhg 212812.1: Difference between revisions

Revision as of 23:16, 11 November 2024

Basic information about the TSS

TSS ID:	rfhg_212812.1
Species:	human
Chr:	chr19

Start:	42365221
End:	42365221
Strand:	+

Source datasets

PRJNA401781

Protocol

RAMPAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D3063743,EH38E1955582)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	MIR8077
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	14090
Nearest PromoterID:	NR_107044
Entrez ID:	102465875
Nearest Unigene:
Nearest Refseq:	NR_107044
Nearest Ensembl:	ENSG00000277533
Gene Name:	MIR8077
Gene Alias:	hsa-mir-8077
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_001271938, intron 35 of 41)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_107044
 |nearest_refseq=NR_107044
+|nearest_transcripts=
 |nearest_unigene=
 |peak_score=1