TSS: Rfhg 212984.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=LF384227:41 MA619804:41 AK315332:52 ENST00000543982.5:56 AK300163:56 AK293542:63 ENST00000262887.10:92 ENST00000594107.1:92 NM_006297.3:92 ENST00000595789.5:113 ENST00000594511.1:115 AB208781:118 BC023593:154 AB384718:160 CR456728:161 M36089:-377
|annotation=promoter-TSS (NM_006297)
|annotation=promoter-TSS (NM_006297)
|ccre_category=PLS
|ccre_category=PLS
Line 25: Line 26:
|nearest_promoter_id=NM_006297
|nearest_promoter_id=NM_006297
|nearest_refseq=NM_006297
|nearest_refseq=NM_006297
|nearest_transcripts=AK315332:52 ENST00000543982.5:56 AK300163:56 AK293542:63 ENST00000262887.10:92 ENST00000594107.1:92 NM_006297.3:92 ENST00000595789.5:113 ENST00000594511.1:115 AB208781:118 BC023593:154 AB384718:160 CR456728:161 M36089:-377
|nearest_unigene=Hs.98493
|nearest_unigene=Hs.98493
|peak_score=1
|peak_score=1

Revision as of 23:19, 11 November 2024

Basic information about the TSS

TSS ID:rfhg_212984.1
Species:human
Chr:chr19
Start:43575619
End:43575629
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D3064721,EH38E1956230)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:LF384227:41
MA619804:41
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • AK315332:52
  • ENST00000543982.5:56
  • AK300163:56
  • AK293542:63
  • ENST00000262887.10:92
  • ENST00000594107.1:92
  • NM_006297.3:92
  • ENST00000595789.5:113
  • ENST00000594511.1:115
  • AB208781:118
  • BC023593:154
  • AB384718:160
  • CR456728:161
  • M36089:-377
view more...
Gene_name:XRCC1
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:-46
Nearest PromoterID:NM_006297
Entrez ID:7515
Nearest Unigene:Hs.98493
Nearest Refseq:NM_006297
Nearest Ensembl:ENSG00000073050
Gene Name:XRCC1
Gene Alias:RCC|SCAR26
Gene Type:protein-coding
CpG%:0.100000
GC%:0.636364
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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