TSS: Rfhg 213608.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000652180.1:0 ENST00000590918.6:0 NM_001308418.2:0 NM_000164.4:0 U39231:3 ENST00000263281.7:15 X81832:15 ENST00000304207.12:16 ENST00000585889.1:16 BC101673:16 BC143300:16 BC093723:16 BC143302:16 S79852:16
|annotation=promoter-TSS (NM_000164)
|annotation=promoter-TSS (NM_000164)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_000164
|nearest_promoter_id=NM_000164
|nearest_refseq=NM_000164
|nearest_refseq=NM_000164
|nearest_transcripts=U39231:3 ENST00000263281.7:15 X81832:15 ENST00000304207.12:16 ENST00000585889.1:16 BC101673:16 BC143300:16 BC093723:16 BC143302:16 S79852:16
|nearest_unigene=Hs.251412
|nearest_unigene=Hs.251412
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000652180.1 ENST00000590918.6
|transcript_name=ENST00000652180.1 ENST00000590918.6 NM_001308418.2 NM_000164.4
|tss_cluster_detected=2
|tss_cluster_detected=2
|tss_id=rfhg_213608.1
|tss_id=rfhg_213608.1

Revision as of 23:30, 11 November 2024

Basic information about the TSS

TSS ID:rfhg_213608.1
Species:human
Chr:chr19
Start:45668207
End:45668241
Strand:+
Source datasetsPRJNA4843412|DRA013844
ProtocolNETCAGE|CAGE
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS (EH38D3066479,EH38E1957693)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000652180.1:0
ENST00000590918.6:0
NM_001308418.2:0
NM_000164.4:0
GeneID:2696
HGNC/MGI_ID:HGNC:4271
UniProt_ID:A0A494C077 P48546
Nearer transcript ids and distances:
  • U39231:3
  • ENST00000263281.7:15
  • X81832:15
  • ENST00000304207.12:16
  • ENST00000585889.1:16
  • BC101673:16
  • BC143300:16
  • BC093723:16
  • BC143302:16
  • S79852:16
view more...
Gene_name:GIPR
Gene_symbol:GIPR
Gene_synonyms:
Gene_source:HGNC:4271



TATA-Box annotation

Distance to TSS:3
Nearest PromoterID:NM_000164
Entrez ID:2696
Nearest Unigene:Hs.251412
Nearest Refseq:NM_000164
Nearest Ensembl:ENSG00000010310
Gene Name:GIPR
Gene Alias:PGQTL2
Gene Type:protein-coding
CpG%:0.029412
GC%:0.600000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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