TSS: Rfhg 214625.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000684222.1:0 ENST00000596965.5:0 ENST00000593309.1:0 NM_001385261.1:0 NM_033142.2:0 AK092722:0 AK310581:0 | |||
|annotation=Intergenic | |annotation=Intergenic | ||
|ccre_category=PLS | |ccre_category=PLS | ||
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|nearest_promoter_id=NM_033142 | |nearest_promoter_id=NM_033142 | ||
|nearest_refseq=NM_033142 | |nearest_refseq=NM_033142 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.681647 | |nearest_unigene=Hs.681647 | ||
|peak_score=1 | |peak_score=1 | ||
| Line 33: | Line 35: | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000684222.1 ENST00000596965.5 AK092722 AK310581 | |transcript_name=ENST00000684222.1 ENST00000596965.5 ENST00000593309.1 NM_001385261.1 NM_033142.2 AK092722 AK310581 | ||
|tss_cluster_detected=2 | |tss_cluster_detected=2 | ||
|tss_id=rfhg_214625.1 | |tss_id=rfhg_214625.1 | ||
Revision as of 23:50, 11 November 2024
Basic information about the TSS
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| Source datasets | FANTOM5|EPD | |||||||||||||
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| Protocol | CAGE|TSS_database | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3069936,EH38E1960550) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -2002 |
|---|---|
| Nearest PromoterID: | NM_033142 |
| Entrez ID: | 94027 |
| Nearest Unigene: | Hs.681647 |
| Nearest Refseq: | NM_033142 |
| Nearest Ensembl: | ENSG00000196337 |
| Gene Name: | CGB7 |
| Gene Alias: | CG-beta-a|CGB6 |
| Gene Type: | protein-coding |
| CpG%: | 0.043478 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.