TSS: Rfhg 215755.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000601804.5:0 ENST00000334197.12:0 ENST00000452676.6:0 ENST00000601469.2:0 ENST00000597183.5:0 NM_001172674.2:0 NM_001172675.2:0 NM_032584.3:0 AK096623:0 AK289994:0 AK314603:0 AY029765:3 ENST00000595710.1:-6 BC002938:7 BC015611:7 ENST00000599096.1:30
|annotation=promoter-TSS (NM_001172674)
|annotation=promoter-TSS (NM_001172674)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_032584
|nearest_promoter_id=NM_032584
|nearest_refseq=NM_032584
|nearest_refseq=NM_032584
|nearest_transcripts=AY029765:3 ENST00000595710.1:-6 BC002938:7 BC015611:7 ENST00000599096.1:30
|nearest_unigene=Hs.467239
|nearest_unigene=Hs.467239
|peak_score=1
|peak_score=1
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|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=ENST00000601804.5 ENST00000334197.12 ENST00000452676.6 ENST00000601469.2 ENST00000597183.5 AK096623 AK289994 AK314603
|transcript_name=ENST00000601804.5 ENST00000334197.12 ENST00000452676.6 ENST00000601469.2 ENST00000597183.5 NM_001172674.2 NM_001172675.2 NM_032584.3 AK096623 AK289994 AK314603
|tss_cluster_detected=5
|tss_cluster_detected=5
|tss_id=rfhg_215755.1
|tss_id=rfhg_215755.1

Revision as of 00:11, 12 November 2024

Basic information about the TSS

TSS ID:rfhg_215755.1
TSS ID(Version3):hg_182557.1
Species:human
Chr:chr19
Start:53159034
End:53159069
Strand:-
Source datasetsFANTOM5|EPD|PRJNA4843412|DRA013844|PRJNA401781
ProtocolCAGE|TSS_database|NETCAGE|RAMPAGE
TSS cluster detected*5

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D3073570,EH38E1963392)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000601804.5:0
ENST00000334197.12:0
ENST00000452676.6:0
ENST00000601469.2:0
ENST00000597183.5:0
NM_001172674.2:0
NM_001172675.2:0
NM_032584.3:0
AK096623:0
AK289994:0
AK314603:0
GeneID:84671
HGNC/MGI_ID:HGNC:16447
UniProt_ID:A0A024R4L7 A8K1S9 B2RBC6 M0QXR8 M0QZJ6 Q96SE7
Nearer transcript ids and distances:
  • AY029765:3
  • ENST00000595710.1:-6
  • BC002938:7
  • BC015611:7
  • ENST00000599096.1:30
view more...
Gene_name:ZNF347
Gene_symbol:ZNF347
Gene_synonyms:ZNF1111
Gene_source:HGNC:16447



TATA-Box annotation

Distance to TSS:2
Nearest PromoterID:NM_032584
Entrez ID:84671
Nearest Unigene:Hs.467239
Nearest Refseq:NM_032584
Nearest Ensembl:ENSG00000197937
Gene Name:ZNF347
Gene Alias:ZNF1111
Gene Type:protein-coding
CpG%:0.142857
GC%:0.583333
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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