TSS: Rfhg 215972.1: Difference between revisions

Revision as of 00:15, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_215972.1
Species:	human
Chr:	chr19

Start:	54115482
End:	54115482
Strand:	+

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3074260,EH38E1963933)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	BC117389:4
GeneID:	26121
HGNC/MGI_ID:	HGNC:15446
UniProt_ID:
Nearer transcript ids and distances:	AY040822:-25 DQ426885:-65 ENST00000419967.5:-72 AK301709:263 ENST00000445811.5:272 ENST00000321030.9:272 NM_015629.4:272 AB593025:272 AK098547:289 AL050369:289 ENST00000445124.5:297 AB593024:319 ENST00000447810.5:327 view more...

Gene_name:	TFPT
Gene_symbol:	PRPF31
Gene_synonyms:	NY-BR-99 PRP31 SNRNP61 hPrp31
Gene_source:	HGNC:15446

TATA-Box annotation

Distance to TSS:	193
Nearest PromoterID:	NM_013342
Entrez ID:	29844
Nearest Unigene:	Hs.590939
Nearest Refseq:	NM_013342
Nearest Ensembl:	ENSG00000105619
Gene Name:	TFPT
Gene Alias:	FB1\|INO80F\|amida
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=BC117389:4 AY040822:-25 DQ426885:-65 ENST00000419967.5:-72 AK301709:263 ENST00000445811.5:272 ENST00000321030.9:272 NM_015629.4:272 AB593025:272 AK098547:289 AL050369:289 ENST00000445124.5:297 AB593024:319 ENST00000447810.5:327
 |annotation=promoter-TSS (NM_001321792)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_013342
 |nearest_refseq=NM_013342
+|nearest_transcripts=AY040822:-25 DQ426885:-65 ENST00000419967.5:-72 AK301709:263 ENST00000445811.5:272 ENST00000321030.9:272 NM_015629.4:272 AB593025:272 AK098547:289 AL050369:289 ENST00000445124.5:297 AB593024:319 ENST00000447810.5:327
 |nearest_unigene=Hs.590939
 |peak_score=1