TSS: Rfhg 216174.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000326321.7:0 ENST00000270442.5:0 NM_001242867.2:0 NM_006737.4:0 AF262967:0 AF263617:0 X93595:0 BC105678:0 BC107951:0 L41270:0 AY366256:0 L76666:0 L76665:0 KJ891513:0 U30272:0 AJ276125:0 X94373:0 AY789068:0 AY789070:0 EF582384:0 LS974083:0 LS974090:0 LS974094:0 LS974102:0 LS974109:0 LT934502:0 X94374:0 AY789067:0 X93596:0 MK460225:0
|annotation=promoter-TSS (NM_006737).10
|annotation=promoter-TSS (NM_006737).10
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_006737
|nearest_promoter_id=NM_006737
|nearest_refseq=NM_006737
|nearest_refseq=NM_006737
|nearest_transcripts=
|nearest_unigene=Hs.645228
|nearest_unigene=Hs.645228
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000326321.7 ENST00000270442.5 AF262967 AF263617 X93595 BC105678 BC107951 L41270 AY366256 L76666 L76665 U30272 AJ276125 X94373 AY789068 AY789070 EF582384 LS974083 LS974090 LS974094 LS974102 LS974109 LT934502 X94374 AY789067 X93596 MK460225
|transcript_name=ENST00000326321.7 ENST00000270442.5 NM_001242867.2 NM_006737.4 AF262967 AF263617 X93595 BC105678 BC107951 L41270 AY366256 L76666 L76665 KJ891513 U30272 AJ276125 X94373 AY789068 AY789070 EF582384 LS974083 LS974090 LS974094 LS974102 LS974109 LT934502 X94374 AY789067 X93596 MK460225
|tss_cluster_detected=1
|tss_cluster_detected=1
|tss_id=rfhg_216174.1
|tss_id=rfhg_216174.1

Revision as of 00:19, 12 November 2024

Basic information about the TSS

TSS ID:rfhg_216174.1
Species:human
Chr:chr19
Start:54850437
End:54850486
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS (EH38D3074853,EH38E1964374)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000326321.7:0
ENST00000270442.5:0
NM_001242867.2:0
NM_006737.4:0
AF262967:0
AF263617:0
X93595:0
BC105678:0
BC107951:0
L41270:0
AY366256:0
L76666:0
L76665:0
KJ891513:0
U30272:0
AJ276125:0
X94373:0
AY789068:0
AY789070:0
EF582384:0
LS974083:0
LS974090:0
LS974094:0
LS974102:0
LS974109:0
LT934502:0
X94374:0
AY789067:0
X93596:0
MK460225:0
GeneID:3812
HGNC/MGI_ID:HGNC:6339
UniProt_ID:A0A0U1WNF3 A0A376A8T7 A0A376A8V5 A0A376A939 A0A376A965 A0A5B9GEK5 P43630 Q32WD1
Nearer transcript ids and distances:
    Gene_name:KIR3DL2
    Gene_symbol:KIR3DL2
    Gene_synonyms:CD158K cl-5 nkat4 nkat4a nkat4b
    Gene_source:HGNC:6339



    TATA-Box annotation

    Distance to TSS:18
    Nearest PromoterID:NM_006737
    Entrez ID:3812
    Nearest Unigene:Hs.645228
    Nearest Refseq:NM_006737
    Nearest Ensembl:ENSG00000240403
    Gene Name:KIR3DL2
    Gene Alias:3DL2|CD158K|KIR-3DL2|NKAT-4|NKAT4|NKAT4B|p140
    Gene Type:protein-coding
    CpG%:0.081633
    GC%:0.700000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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