TSS: Rfhg 216394.1: Difference between revisions

Revision as of 00:24, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_216394.1
Species:	human
Chr:	chr19

Start:	55376819
End:	55376831
Strand:	+

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D3075389,EH38E1964795)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000291934.4:0 NM_139172.3:0
GeneID:	147744
HGNC/MGI_ID:	HGNC:29632
UniProt_ID:	Q8WZ59
Nearer transcript ids and distances:	AF442729:5 BC128189:5 BC128190:5 KJ895605:22 view more...

Gene_name:	TMEM190
Gene_symbol:	TMEM190
Gene_synonyms:	MDAC1
Gene_source:	HGNC:29632

TATA-Box annotation

Distance to TSS:	-1
Nearest PromoterID:	NM_139172
Entrez ID:	147744
Nearest Unigene:	Hs.590943
Nearest Refseq:	NM_139172
Nearest Ensembl:	ENSG00000160472
Gene Name:	TMEM190
Gene Alias:	MDAC1
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.615385
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000291934.4:0 NM_139172.3:0 AF442729:5 BC128189:5 BC128190:5 KJ895605:22
 |annotation=promoter-TSS (NM_139172)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_139172
 |nearest_refseq=NM_139172
+|nearest_transcripts=AF442729:5 BC128189:5 BC128190:5 KJ895605:22
 |nearest_unigene=Hs.590943
 |peak_score=1
@@ Line 33: / Line 35: @@
 |strand=+
 |tata_box=
-|transcript_name=ENST00000291934.4
+|transcript_name=ENST00000291934.4 NM_139172.3
 |tss_cluster_detected=2
 |tss_id=rfhg_216394.1