TSS: Rfhg 216906.1: Difference between revisions

Revision as of 00:33, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_216906.1
Species:	human
Chr:	chr19

Start:	58544102
End:	58544117
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3077534,EH38E1966428)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	TRIM28
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	45
Nearest PromoterID:	NM_005762
Entrez ID:	10155
Nearest Unigene:	Hs.467408
Nearest Refseq:	NM_005762
Nearest Ensembl:	ENSG00000130726
Gene Name:	TRIM28
Gene Alias:	KAP1\|PPP1R157\|RNF96\|TF1B\|TIF1B
Gene Type:	protein-coding
CpG%:	0.133333
GC%:	0.687500
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=promoter-TSS (NM_005762)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_005762
 |nearest_refseq=NM_005762
+|nearest_transcripts=
 |nearest_unigene=Hs.467408
 |peak_score=1