TSS: Rfhg 225552.1: Difference between revisions

Revision as of 03:00, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_225552.1
Species:	human
Chr:	chr21

Start:	33402655
End:	33402661
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3336398,EH38E2138033)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001329128.2:221
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	U05875:235

Gene_name:	IFNGR2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-238
Nearest PromoterID:	NM_001329128
Entrez ID:	3460
Nearest Unigene:	Hs.634632
Nearest Refseq:	NM_005534
Nearest Ensembl:	ENSG00000159128
Gene Name:	IFNGR2
Gene Alias:	AF-1\|IFGR2\|IFNGT1\|IMD28
Gene Type:	protein-coding
CpG%:	0.166667
GC%:	0.428571
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001329128.2:221 U05875:235
 |annotation=promoter-TSS (NM_001329128)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001329128
 |nearest_refseq=NM_005534
+|nearest_transcripts=U05875:235
 |nearest_unigene=Hs.634632
 |peak_score=1