TSS: Rfhg 226765.1: Difference between revisions

Revision as of 03:22, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_226765.1
Species:	human
Chr:	chr21

Start:	44133603
End:	44133647
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000645487.1:0 ENST00000644251.1:0 ENST00000495007.5:0 ENST00000427803.6:0 ENST00000493883.5:0
GeneID:	8209
HGNC/MGI_ID:	HGNC:1273
UniProt_ID:	A0A2R8Y588 A0A2R8Y6K9 F2Z2Q0
Nearer transcript ids and distances:	ENST00000480786.1:27 ENST00000348499.9:33 ENST00000291577.11:36 NM_001320383.2:36 NM_001320384.2:36 NM_198155.5:36 NM_004649.8:36 NR_135220.2:36 ENST00000389690.7:132 view more...

Gene_name:	GATD3A
Gene_symbol:	GATD3
Gene_synonyms:	D21S2048E ES1 GT335 HES1 KNP-I KNP-Ia KNPH KNPI
Gene_source:	HGNC:1273

TATA-Box annotation

Distance to TSS:	13
Nearest PromoterID:	NM_198155
Entrez ID:	8209
Nearest Unigene:	Hs.413482
Nearest Refseq:	NM_004649
Nearest Ensembl:	ENSG00000160221
Gene Name:	GATD3A
Gene Alias:	C21orf33\|ES1\|GATD3\|GT335\|HES1\|KNPH\|KNPI
Gene Type:	protein-coding
CpG%:	0.136364
GC%:	0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000645487.1:0 ENST00000644251.1:0 ENST00000495007.5:0 ENST00000427803.6:0 ENST00000493883.5:0 ENST00000480786.1:27 ENST00000348499.9:33 ENST00000291577.11:36 NM_001320383.2:36 NM_001320384.2:36 NM_198155.5:36 NM_004649.8:36 NR_135220.2:36 ENST00000389690.7:132
 |annotation=promoter-TSS (NM_004649)
 |ccre_category=N
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_198155
 |nearest_refseq=NM_004649
+|nearest_transcripts=ENST00000480786.1:27 ENST00000348499.9:33 ENST00000291577.11:36 NM_001320383.2:36 NM_001320384.2:36 NM_198155.5:36 NM_004649.8:36 NR_135220.2:36 ENST00000389690.7:132
 |nearest_unigene=Hs.413482
 |peak_score=1