TSS: Rfhg 228000.1: Difference between revisions

Revision as of 03:43, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_228000.1
Species:	human
Chr:	chr22

Start:	22196227
End:	22196239
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D3355152,EH38E2151716)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	KX947746:-30
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	KX947882:-37 KX949051:-37 view more...

Gene_name:	VPREB1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-48553
Nearest PromoterID:	NM_007128
Entrez ID:	7441
Nearest Unigene:	Hs.247979
Nearest Refseq:	NM_007128
Nearest Ensembl:	ENSG00000169575
Gene Name:	VPREB1
Gene Alias:	CD179a\|IGI\|IGVPB\|VPREB
Gene Type:	protein-coding
CpG%:	0.083333
GC%:	0.615385
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=KX947746:-30 KX947882:-37 KX949051:-37
 |annotation=Intergenic
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_007128
 |nearest_refseq=NM_007128
+|nearest_transcripts=KX947882:-37 KX949051:-37
 |nearest_unigene=Hs.247979
 |peak_score=1