TSS: Rfhg 231357.1: Difference between revisions

Revision as of 04:43, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_231357.1
Species:	human
Chr:	chr22

Start:	45605429
End:	45605435
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D3379064,EH38E2169711)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000422971.1:-186 BC045163:-186
GeneID:	100506737
HGNC/MGI_ID:	HGNC:51520
UniProt_ID:
Nearer transcript ids and distances:	NR_131244.1:-212

Gene_name:	LINC01589
Gene_symbol:	LINC01589
Gene_synonyms:	CTA-941F9.9 TCONS_00029353
Gene_source:	HGNC:51520

TATA-Box annotation

Distance to TSS:	215
Nearest PromoterID:	NR_131244
Entrez ID:	100506737
Nearest Unigene:	Hs.517692
Nearest Refseq:	NR_131244
Nearest Ensembl:	ENSG00000238120
Gene Name:	LINC01589
Gene Alias:	TCONS_00029353
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.428571
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000422971.1:-186 BC045163:-186 NR_131244.1:-212
 |annotation=non-coding (NR_131244, exon 1 of 2)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_131244
 |nearest_refseq=NR_131244
+|nearest_transcripts=NR_131244.1:-212
 |nearest_unigene=Hs.517692
 |peak_score=1