TSS: Rfhg 235931.1: Difference between revisions

Revision as of 06:00, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_235931.1
TSS ID(Version3):	hg_199197.1
Species:	human
Chr:	chrX

Start:	48911639
End:	48911671
Strand:	-

Source datasets

Protocol

TSS cluster detected^*

13

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4282764,EH38E2754210)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000635285.1:0 ENST00000247138.11:0 ENST00000376529.8:0 ENST00000635628.1:0 ENST00000445167.7:0 ENST00000635589.1:0 ENST00000616181.5:0 ENST00000452555.7:0 ENST00000635238.1:0 ENST00000634665.1:0 ENST00000635015.1:0 ENST00000634461.1:0 NM_001282650.2:0 NM_001282651.2:0 NM_001042498.3:0 NM_005660.3:0 NM_001282647.2:0 NM_001282649.2:0 NM_001032289.3:0 D88146:0 AK225508:0 BC035747:0 AK290284:0 AK293415:0 AK293419:0 AK298484:0 AK299748:0
GeneID:	7355
HGNC/MGI_ID:	HGNC:11022
UniProt_ID:	A0A0U1RR61 A0A0U1RRB4 A0A0U1RRG4 A0A0U1RRN1 A6NFI1 B4DE15 B4DSH7 P78381
Nearer transcript ids and distances:	KJ892355:2 CR450287:3 AK292816:-4 ENST00000635460.1:5 ENST00000376512.2:-6 ENST00000446885.1:-266 ENST00000376521.6:-287 ENST00000376515.8:-287 NM_001282648.2:-287 D84454:-287 view more...

Gene_name:	SLC35A2
Gene_symbol:	SLC35A2
Gene_synonyms:	UGAT UGT UGT1 UGT2 UGTL
Gene_source:	HGNC:11022

TATA-Box annotation

Distance to TSS:	-9
Nearest PromoterID:	NM_001282647
Entrez ID:	7355
Nearest Unigene:	Hs.21899
Nearest Refseq:	NM_005660
Nearest Ensembl:	ENSG00000102100
Gene Name:	SLC35A2
Gene Alias:	CDG2M\|CDGX\|UDP-Gal-Tr\|UGALT\|UGAT\|UGT\|UGT1\|UGT2\|UGTL
Gene Type:	protein-coding
CpG%:	0.093750
GC%:	0.727273
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000635285.1:0 ENST00000247138.11:0 ENST00000376529.8:0 ENST00000635628.1:0 ENST00000445167.7:0 ENST00000635589.1:0 ENST00000616181.5:0 ENST00000452555.7:0 ENST00000635238.1:0 ENST00000634665.1:0 ENST00000635015.1:0 ENST00000634461.1:0 NM_001282650.2:0 NM_001282651.2:0 NM_001042498.3:0 NM_005660.3:0 NM_001282647.2:0 NM_001282649.2:0 NM_001032289.3:0 D88146:0 AK225508:0 BC035747:0 AK290284:0 AK293415:0 AK293419:0 AK298484:0 AK299748:0 KJ892355:2 CR450287:3 AK292816:-4 ENST00000635460.1:5 ENST00000376512.2:-6 ENST00000446885.1:-266 ENST00000376521.6:-287 ENST00000376515.8:-287 NM_001282648.2:-287 D84454:-287
 |annotation=promoter-TSS (NM_001042498)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001282647
 |nearest_refseq=NM_005660
+|nearest_transcripts=KJ892355:2 CR450287:3 AK292816:-4 ENST00000635460.1:5 ENST00000376512.2:-6 ENST00000446885.1:-266 ENST00000376521.6:-287 ENST00000376515.8:-287 NM_001282648.2:-287 D84454:-287
 |nearest_unigene=Hs.21899
 |peak_score=1
@@ Line 33: / Line 35: @@
 |strand=-
 |tata_box=
-|transcript_name=ENST00000635285.1 ENST00000247138.11 ENST00000376529.8 ENST00000635628.1 ENST00000445167.7 ENST00000635589.1 ENST00000616181.5 ENST00000452555.7 ENST00000635238.1 ENST00000634665.1 ENST00000635015.1 ENST00000634461.1 D88146 AK225508 BC035747 AK290284 AK293415 AK293419 AK298484 AK299748
+|transcript_name=ENST00000635285.1 ENST00000247138.11 ENST00000376529.8 ENST00000635628.1 ENST00000445167.7 ENST00000635589.1 ENST00000616181.5 ENST00000452555.7 ENST00000635238.1 ENST00000634665.1 ENST00000635015.1 ENST00000634461.1 NM_001282650.2 NM_001282651.2 NM_001042498.3 NM_005660.3 NM_001282647.2 NM_001282649.2 NM_001032289.3 D88146 AK225508 BC035747 AK290284 AK293415 AK293419 AK298484 AK299748
 |tss_cluster_detected=13
 |tss_id=rfhg_235931.1