TSS: Rfhg 236905.1: Difference between revisions

Revision as of 06:17, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_236905.1
Species:	human
Chr:	chrX

Start:	71532362
End:	71532400
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D4289875,EH38E2758151)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	OGT
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-723
Nearest PromoterID:	NM_181673
Entrez ID:	8473
Nearest Unigene:	Hs.405410
Nearest Refseq:	NM_003605
Nearest Ensembl:	ENSG00000147162
Gene Name:	OGT
Gene Alias:	HINCUT-1\|HRNT1\|MRX106\|O-GLCNAC\|OGT1
Gene Type:	protein-coding
CpG%:	0.052632
GC%:	0.512821
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=promoter-TSS (NM_181673)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_181673
 |nearest_refseq=NM_003605
+|nearest_transcripts=
 |nearest_unigene=Hs.405410
 |peak_score=1