TSS: Rfhg 240761.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000155093.8:0 ENST00000625061.3:0 NM_001369708.1:0 NM_001369704.1:0 NM_001369709.1:0 NM_001145276.2:0 NM_001369707.1:0 NM_001369702.1:0 NM_001369705.1:0 NM_001369710.1:0 NM_001145275.2:0 NM_001369703.1:0 NM_001369706.1:0 NM_003411.4:0 AK301061:0 ENST00000469869.1:73 ENST00000443793.1:78 ENST00000383052.5:-94 LF381421:149 MA616998:149 ENST00000449237.4:224 BC114526:224 BC114960:224 AK310553:-304
|annotation=promoter-TSS (NM_003411)
|annotation=promoter-TSS (NM_003411)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_001369702
|nearest_promoter_id=NM_001369702
|nearest_refseq=NM_003411
|nearest_refseq=NM_003411
|nearest_transcripts=ENST00000469869.1:73 ENST00000443793.1:78 ENST00000383052.5:-94 LF381421:149 MA616998:149 ENST00000449237.4:224 BC114526:224 BC114960:224 AK310553:-304
|nearest_unigene=Hs.522845
|nearest_unigene=Hs.522845
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000155093.8 ENST00000625061.3 AK301061
|transcript_name=ENST00000155093.8 ENST00000625061.3 NM_001369708.1 NM_001369704.1 NM_001369709.1 NM_001145276.2 NM_001369707.1 NM_001369702.1 NM_001369705.1 NM_001369710.1 NM_001145275.2 NM_001369703.1 NM_001369706.1 NM_003411.4 AK301061
|tss_cluster_detected=2
|tss_cluster_detected=2
|tss_id=rfhg_240761.1
|tss_id=rfhg_240761.1

Revision as of 07:30, 12 November 2024

Basic information about the TSS

TSS ID:rfhg_240761.1
Species:human
Chr:chrY
Start:2935375
End:2935427
Strand:+
Source datasetsPRJNA4843412|DRA013844
ProtocolNETCAGE|CAGE
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D4323365,EH38E2774811)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000155093.8:0
ENST00000625061.3:0
NM_001369708.1:0
NM_001369704.1:0
NM_001369709.1:0
NM_001145276.2:0
NM_001369707.1:0
NM_001369702.1:0
NM_001369705.1:0
NM_001369710.1:0
NM_001145275.2:0
NM_001369703.1:0
NM_001369706.1:0
NM_003411.4:0
AK301061:0
GeneID:7544
HGNC/MGI_ID:HGNC:12870
UniProt_ID:P08048
Nearer transcript ids and distances:
  • ENST00000469869.1:73
  • ENST00000443793.1:78
  • ENST00000383052.5:-94
  • LF381421:149
  • MA616998:149
  • ENST00000449237.4:224
  • BC114526:224
  • BC114960:224
  • AK310553:-304
view more...
Gene_name:ZFY
Gene_symbol:ZFY
Gene_synonyms:ZNF911
Gene_source:HGNC:12870



TATA-Box annotation

Distance to TSS:20
Nearest PromoterID:NM_001369702
Entrez ID:7544
Nearest Unigene:Hs.522845
Nearest Refseq:NM_003411
Nearest Ensembl:ENSG00000067646
Gene Name:ZFY
Gene Alias:ZNF911
Gene Type:protein-coding
CpG%:0.115385
GC%:0.716981
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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