TSS: Rfhg 25000.1: Difference between revisions

Revision as of 07:51, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_25000.1
Species:	human
Chr:	chr2

Start:	31217512
End:	31217519
Strand:	-

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000403897.4:0 NM_001145122.2:0 AK296910:0
GeneID:	440854
HGNC/MGI_ID:	HGNC:16664
UniProt_ID:	A8MX76 B7Z467
Nearer transcript ids and distances:

Gene_name:	CAPN14
Gene_symbol:	CAPN14
Gene_synonyms:
Gene_source:	HGNC:16664

TATA-Box annotation

Distance to TSS:	0
Nearest PromoterID:	NM_001145122
Entrez ID:	440854
Nearest Unigene:	Hs.468059
Nearest Refseq:	NM_001145122
Nearest Ensembl:	ENSG00000214711
Gene Name:	CAPN14
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000403897.4:0 NM_001145122.2:0 AK296910:0
 |annotation=promoter-TSS (NM_001145122)
 |ccre_category=N
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001145122
 |nearest_refseq=NM_001145122
+|nearest_transcripts=
 |nearest_unigene=Hs.468059
 |peak_score=1
@@ Line 33: / Line 35: @@
 |strand=-
 |tata_box=
-|transcript_name=ENST00000403897.4 AK296910
+|transcript_name=ENST00000403897.4 NM_001145122.2 AK296910
 |tss_cluster_detected=2
 |tss_id=rfhg_25000.1