TSS: Rfhg 2532.1: Difference between revisions

From referenceTSS
Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000235835.8:0 ENST00000330072.9:0 ENST00000492217.1:0 NM_001320979.1:0 NM_003689.4:0 LF206692:0 MA442269:0 BC004111:0 BC011586:0 BC013996:0 AF026947:0 AK225267:0 BC007352:0 BC012171:0 EU794591:0 Y16675:0 BC010852:0 AK303131:0 AK310609:0 KJ901887:27 DQ891003:30 DQ894182:30 BT007347:32 ENST00000489286.5:162 LY501480:-296 MA780368:-296
|annotation=promoter-TSS (NR_109848)
|annotation=promoter-TSS (NR_109848)
|ccre_category=PLS
|ccre_category=PLS
Line 25: Line 26:
|nearest_promoter_id=NM_003689
|nearest_promoter_id=NM_003689
|nearest_refseq=NM_003689
|nearest_refseq=NM_003689
|nearest_transcripts=KJ901887:27 DQ891003:30 DQ894182:30 BT007347:32 ENST00000489286.5:162 LY501480:-296 MA780368:-296
|nearest_unigene=Hs.571886
|nearest_unigene=Hs.571886
|peak_score=1
|peak_score=1
Line 33: Line 35:
|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=ENST00000235835.8 ENST00000330072.9 ENST00000492217.1 BC004111 BC011586 BC013996 AF026947 AK225267 BC007352 BC012171 EU794591 Y16675 BC010852 AK303131 AK310609
|transcript_name=ENST00000235835.8 ENST00000330072.9 ENST00000492217.1 NM_001320979.1 NM_003689.4 LF206692 MA442269 BC004111 BC011586 BC013996 AF026947 AK225267 BC007352 BC012171 EU794591 Y16675 BC010852 AK303131 AK310609
|tss_cluster_detected=9
|tss_cluster_detected=9
|tss_id=rfhg_2532.1
|tss_id=rfhg_2532.1

Revision as of 07:57, 12 November 2024

Basic information about the TSS

TSS ID:rfhg_2532.1
TSS ID(Version3):hg_10654.1
Species:human
Chr:chr1
Start:19312069
End:19312149
Strand:-
Source datasetsFANTOM5|EPD|PRJNA4843412|DRA013844|PRJNA615891|PRJNA401781
|PRJNA548673
ProtocolCAGE|TSS_database|NETCAGE|TIF-seq2|SLIC_CAGE|ReCappable-seq
TSS cluster detected*9

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2134415,EH38E1324469)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000235835.8:0
ENST00000330072.9:0
ENST00000492217.1:0
NM_001320979.1:0
NM_003689.4:0
LF206692:0
MA442269:0
BC004111:0
BC011586:0
BC013996:0
AF026947:0
AK225267:0
BC007352:0
BC012171:0
EU794591:0
Y16675:0
BC010852:0
AK303131:0
AK310609:0
GeneID:8574
HGNC/MGI_ID:HGNC:389
UniProt_ID:B4DZX4 H3BLU7 V9HWA2
Nearer transcript ids and distances:
  • KJ901887:27
  • DQ891003:30
  • DQ894182:30
  • BT007347:32
  • ENST00000489286.5:162
  • LY501480:-296
  • MA780368:-296
view more...
Gene_name:AKR7A2
Gene_symbol:AKR7A2
Gene_synonyms:AFAR
Gene_source:HGNC:389



TATA-Box annotation

Distance to TSS:37
Nearest PromoterID:NM_003689
Entrez ID:8574
Nearest Unigene:Hs.571886
Nearest Refseq:NM_003689
Nearest Ensembl:ENSG00000053371
Gene Name:AKR7A2
Gene Alias:AFAR|AFAR1|AFB1-AR1|AKR7
Gene Type:protein-coding
CpG%:0.187500
GC%:0.728395
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
Retrieved from "https://reftss.riken.jp/reftss/index.php?title=TSS:Rfhg_2532.1&oldid=3314045"