TSS: Rfhg 29471.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=NM_001321995.2:19 NM_001321997.2:19 BC014172:22 AB049940:114 ENST00000475895.5:209 AK295812:209 ENST00000272418.7:214 NM_031902.5:214 NM_001321996.2:214 NR_136153.2:214 NR_136152.2:214 ENST00000345084.9:223 AK058160:223 DQ892620:224 DQ895860:224 KJ894598:229 CU680814:229
|annotation=promoter-TSS (NM_001321995)
|annotation=promoter-TSS (NM_001321995)
|ccre_category=PLS
|ccre_category=PLS
Line 25: Line 26:
|nearest_promoter_id=NR_136153
|nearest_promoter_id=NR_136153
|nearest_refseq=NM_031902
|nearest_refseq=NM_031902
|nearest_transcripts=BC014172:22 AB049940:114 ENST00000475895.5:209 AK295812:209 ENST00000272418.7:214 NM_031902.5:214 NM_001321996.2:214 NR_136153.2:214 NR_136152.2:214 ENST00000345084.9:223 AK058160:223 DQ892620:224 DQ895860:224 KJ894598:229 CU680814:229
|nearest_unigene=Hs.655259
|nearest_unigene=Hs.655259
|peak_score=1
|peak_score=1

Revision as of 09:12, 12 November 2024

Basic information about the TSS

TSS ID:rfhg_29471.1
Species:human
Chr:chr2
Start:95122022
End:95122039
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D3151990,EH38E2016054)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:NM_001321995.2:19
NM_001321997.2:19
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • BC014172:22
  • AB049940:114
  • ENST00000475895.5:209
  • AK295812:209
  • ENST00000272418.7:214
  • NM_031902.5:214
  • NM_001321996.2:214
  • NR_136153.2:214
  • NR_136152.2:214
  • ENST00000345084.9:223
  • AK058160:223
  • DQ892620:224
  • DQ895860:224
  • KJ894598:229
  • CU680814:229
view more...
Gene_name:MRPS5
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:-3
Nearest PromoterID:NR_136153
Entrez ID:64969
Nearest Unigene:Hs.655259
Nearest Refseq:NM_031902
Nearest Ensembl:ENSG00000144029
Gene Name:MRPS5
Gene Alias:MRP-S5|S5mt
Gene Type:protein-coding
CpG%:0.117647
GC%:0.777778
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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