TSS: Rfhg 29684.1: Difference between revisions

Revision as of 09:15, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_29684.1
Species:	human
Chr:	chr2

Start:	96877925
End:	96877937
Strand:	-

Source datasets

PRJNA401781

Protocol

oligo_capping

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D3153355,EH38E2017008)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	SEMA4C
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-7851
Nearest PromoterID:	NM_017789
Entrez ID:	54910
Nearest Unigene:	Hs.516220
Nearest Refseq:	NM_017789
Nearest Ensembl:	ENSG00000168758
Gene Name:	SEMA4C
Gene Alias:	M-SEMA-F\|SEMACL1\|SEMAF\|SEMAI
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.538462
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=exon (NM_001172667, exon 4 of 5)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_017789
 |nearest_refseq=NM_017789
+|nearest_transcripts=
 |nearest_unigene=Hs.516220
 |peak_score=1