TSS: Rfhg 30074.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=NM_001384550.1:0 NM_001384559.1:0 NM_001384561.1:0 NM_001384549.1:0 NM_001384554.1:0 NM_001384558.1:0 NM_001384567.1:0 NM_001384557.1:0 NM_001384551.1:0 NM_001384564.1:0 NM_001384560.1:0 NM_001384556.1:0 NM_001384563.1:0 NM_001384562.1:0 NM_001384553.1:0 NM_001384552.1:0 NM_001384572.1:0 NM_001384555.1:0 NM_001384579.1:0 ENST00000627726.2:-173 ENST00000347699.8:-173 ENST00000456652.5:-173 AB384511:-173 AY834276:-173 AY212247:-173 ENST00000634702.1:-228 ENST00000413150.6:-228 ENST00000302217.9:-228 ENST00000625522.2:-228 AF096300:-228 EU794634:-228 AK296396:-247 ENST00000417294.5:258 | |||
|annotation=intron (NM_145686, intron 1 of 30) | |annotation=intron (NM_145686, intron 1 of 30) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
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|nearest_promoter_id=NM_001242560 | |nearest_promoter_id=NM_001242560 | ||
|nearest_refseq=NM_004834 | |nearest_refseq=NM_004834 | ||
|nearest_transcripts=ENST00000627726.2:-173 ENST00000347699.8:-173 ENST00000456652.5:-173 AB384511:-173 AY834276:-173 AY212247:-173 ENST00000634702.1:-228 ENST00000413150.6:-228 ENST00000302217.9:-228 ENST00000625522.2:-228 AF096300:-228 EU794634:-228 AK296396:-247 ENST00000417294.5:258 | |||
|nearest_unigene=Hs.701013 | |nearest_unigene=Hs.701013 | ||
|peak_score=1 | |peak_score=1 | ||
Revision as of 09:23, 12 November 2024
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3157475,EH38E2019989) |
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| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 556 |
|---|---|
| Nearest PromoterID: | NM_001242560 |
| Entrez ID: | 9448 |
| Nearest Unigene: | Hs.701013 |
| Nearest Refseq: | NM_004834 |
| Nearest Ensembl: | ENSG00000071054 |
| Gene Name: | MAP4K4 |
| Gene Alias: | FLH21957|HEL-S-31|HGK|MEKKK4|NIK |
| Gene Type: | protein-coding |
| CpG%: | 0.055556 |
| GC%: | 0.631579 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
Property "Nearest transcripts" (as page type) with input value "ENST00000627726.2:-173 ENST00000347699.8:-173 ENST00000456652.5:-173 AB384511:-173 AY834276:-173 AY212247:-173 ENST00000634702.1:-228 ENST00000413150.6:-228 ENST00000302217.9:-228 ENST00000625522.2:-228 AF096300:-228 EU794634:-228 AK296396:-247 ENST00000417294.5:258" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.