TSS: Rfhg 30600.1: Difference between revisions

Revision as of 09:32, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_30600.1
Species:	human
Chr:	chr2

Start:	110114296
End:	110114304
Strand:	-

Source datasets

PRJDB5282

Protocol

C1CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D3163852,EH38E2024272)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	MALL
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	2266
Nearest PromoterID:	NM_005434
Entrez ID:	7851
Nearest Unigene:	Hs.185055
Nearest Refseq:	NM_005434
Nearest Ensembl:	ENSG00000144063
Gene Name:	MALL
Gene Alias:	BENE
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.555556
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_005434, intron 1 of 3)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_005434
 |nearest_refseq=NM_005434
+|nearest_transcripts=
 |nearest_unigene=Hs.185055
 |peak_score=1