TSS: Rfhg 3070.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000455966.2:-188 NR_110692.1:-188 BC039533:-188 ENST00000655353.1:354 ENST00000667783.1:363 ENST00000635097.2:365 ENST00000657670.1:369 ENST00000655655.1:384 | |||
|annotation=intron (NR_109760, intron 1 of 1) | |annotation=intron (NR_109760, intron 1 of 1) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NR_110692 | |nearest_promoter_id=NR_110692 | ||
|nearest_refseq=NR_110692 | |nearest_refseq=NR_110692 | ||
|nearest_transcripts=ENST00000655353.1:354 ENST00000667783.1:363 ENST00000635097.2:365 ENST00000657670.1:369 ENST00000655655.1:384 | |||
|nearest_unigene=Hs.617422 | |nearest_unigene=Hs.617422 | ||
|peak_score=1 | |peak_score=1 | ||
| Line 33: | Line 35: | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000455966.2 BC039533 | |transcript_name=ENST00000455966.2 NR_110692.1 BC039533 | ||
|tss_cluster_detected=1 | |tss_cluster_detected=1 | ||
|tss_id=rfhg_3070.1 | |tss_id=rfhg_3070.1 | ||
Revision as of 09:34, 12 November 2024
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D2137195,EH38E1326685) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 195 |
|---|---|
| Nearest PromoterID: | NR_110692 |
| Entrez ID: | 101928043 |
| Nearest Unigene: | Hs.617422 |
| Nearest Refseq: | NR_110692 |
| Nearest Ensembl: | ENSG00000228397 |
| Gene Name: | LINC01635 |
| Gene Alias: | - |
| Gene Type: | ncRNA |
| CpG%: | 0.071429 |
| GC%: | 0.600000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.