TSS: Rfhg 34682.1: Difference between revisions

Revision as of 10:43, 12 November 2024

Basic information about the TSS

TSS ID:	rfhg_34682.1
Species:	human
Chr:	chr2

Start:	171231285
End:	171231298
Strand:	-

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D3208293,EH38E2050875)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001136554.2:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000521943.5:-16 AK090779:-16 view more...

Gene_name:	TLK1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	2
Nearest PromoterID:	NM_001136554
Entrez ID:	9874
Nearest Unigene:	Hs.744917
Nearest Refseq:	NM_012290
Nearest Ensembl:	ENSG00000198586
Gene Name:	TLK1
Gene Alias:	PKU-beta
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.571429
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001136554.2:0 ENST00000521943.5:-16 AK090779:-16
 |annotation=promoter-TSS (NM_001136554)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001136554
 |nearest_refseq=NM_012290
+|nearest_transcripts=ENST00000521943.5:-16 AK090779:-16
 |nearest_unigene=Hs.744917
 |peak_score=1